View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_25 (Length: 221)
Name: NF0053_low_25
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 41785617 - 41785399
Alignment:
| Q |
1 |
accctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactg |
100 |
Q |
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| T |
41785617 |
accctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactg |
41785518 |
T |
|
| Q |
101 |
cttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785517 |
cttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaattctt |
41785418 |
T |
|
| Q |
201 |
ccattttcttttctgtcga |
219 |
Q |
| |
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|||||||| |||||||||| |
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| T |
41785417 |
ccattttcctttctgtcga |
41785399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 10834795 - 10834622
Alignment:
| Q |
43 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
142 |
Q |
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|||||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||| |
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| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
|
| Q |
143 |
tggtgcaacaag-cggatattgtcttccattttcttcctcaacttttctgccaattcttccattttcttttctg |
215 |
Q |
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| |||||||||| | ||||||| ||||||| ||| || || | | |||||||||||||||||||| |||||| |
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| T |
10834695 |
tagtgcaacaagccctatattgttttccattctctatctaaaatctcctgccaattcttccattttcctttctg |
10834622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 2281450 - 2281576
Alignment:
| Q |
50 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
149 |
Q |
| |
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||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
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| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
2281549 |
T |
|
| Q |
150 |
acaagcggatattgtcttccattttct |
176 |
Q |
| |
|
| | | ||||| ||||||||||||| |
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| T |
2281550 |
atatatgtatattatcttccattttct |
2281576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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