View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_3 (Length: 643)
Name: NF0053_low_3
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 229775 - 229161
Alignment:
| Q |
1 |
attagcttttaatattggacttaacacattccttacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaa |
100 |
Q |
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| T |
229775 |
attagcttttaatattggacttaacatat-ccttacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaa |
229677 |
T |
|
| Q |
101 |
tcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229676 |
tcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagt |
229577 |
T |
|
| Q |
201 |
ttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaatgtatatgttgcctttcctaattaaaaaacatgtttatttataaactaag |
300 |
Q |
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| T |
229576 |
ttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaat-------------ttcctaattaaaaaacatgtttatgtataaactaag |
229490 |
T |
|
| Q |
301 |
cttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229489 |
cttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaat |
229390 |
T |
|
| Q |
401 |
taattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229389 |
taattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgt |
229290 |
T |
|
| Q |
501 |
tctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattattattattttctcgatgtgatatgggagtttattact |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
229289 |
tctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattat---tattttctcgatgtgatatgggagtttattact |
229193 |
T |
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| Q |
601 |
acatacattgtttgcattcttgagacattcat |
632 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
229192 |
acatacattgtttgcattcttgagacattcat |
229161 |
T |
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