View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_low_3 (Length: 643)

Name: NF0053_low_3
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_low_3
NF0053_low_3
[»] chr5 (1 HSPs)
chr5 (1-632)||(229161-229775)


Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 229775 - 229161
Alignment:
Q  1 attagcttttaatattggacttaacacattccttacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaa 100  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229775 attagcttttaatattggacttaacatat-ccttacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaa 229677  T
Q  101 tcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229676 tcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagt 229577  T
Q  201 ttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaatgtatatgttgcctttcctaattaaaaaacatgtttatttataaactaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||||    
T  229576 ttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaat-------------ttcctaattaaaaaacatgtttatgtataaactaag 229490  T
Q  301 cttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229489 cttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaat 229390  T
Q  401 taattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229389 taattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgt 229290  T
Q  501 tctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattattattattttctcgatgtgatatgggagtttattact 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  229289 tctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattat---tattttctcgatgtgatatgggagtttattact 229193  T
Q  601 acatacattgtttgcattcttgagacattcat 632  Q
    ||||||||||||||||||||||||||||||||    
T  229192 acatacattgtttgcattcttgagacattcat 229161  T

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