View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_4 (Length: 562)
Name: NF0053_low_4
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 99 - 555
Target Start/End: Complemental strand, 21102158 - 21101697
Alignment:
| Q |
99 |
cttacacattacaagagaagaggattattgctggatatgagtacatgaggttttatggtgcattggtttcgggatcagttagaaaaccttctgtttcgat |
198 |
Q |
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| T |
21102158 |
cttacacattacaagagaagaggattattgctggatatgagtacatgaggttttatggttcattggtttcgggatcagttggaaaaccatctgtttcgat |
21102059 |
T |
|
| Q |
199 |
tggaagatatgcaaaaactgagtttgatgcaaaggatgatgttgcagctatattggtgcatcacttgttagcttcatccggacatacaattagggacttc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
21102058 |
tggaagatatgcaaaaactgagtttgatgcaaaggaagatgttgcagctatattgattcatcgcttgttagctttatccggacatacaattagggacttc |
21101959 |
T |
|
| Q |
299 |
aactactataatgttcaattacttcaagaagagttggaaacaaccaagaaggaaaaccttgagttgaaatttgagttgggcatccaaaatg-----aaag |
393 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21101958 |
aactactataatgttgaattacttcaagaagagttggaaaccaccaagaaggaaaaccttgagttgaaatttgagttgggcatccaaaatgaaaaaaaaa |
21101859 |
T |
|
| Q |
394 |
agnnnnnnnnntttaatcaataggtcgaactcaataaatgtctttaatctttgtgtttagtgggtttttatatttatttttataatgtcattaagttgtt |
493 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21101858 |
aaaaaaacgaatttaatcaataggtcaaactcaataaatgtctttaatctttgtgtttagtgggtttttatatttatttttataatgtcattaagttgtt |
21101759 |
T |
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| Q |
494 |
tatgttagtcttccaatgttaatcttaatgttgttaattattggatgtaaagtcctatgcta |
555 |
Q |
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| T |
21101758 |
tatgttagtcttccaatgttagtcttaatgttgttaattattggatgtaaagtcctatgcta |
21101697 |
T |
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