View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_low_5 (Length: 531)

Name: NF0053_low_5
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_low_5
NF0053_low_5
[»] chr3 (4 HSPs)
chr3 (168-464)||(52093132-52093428)
chr3 (168-259)||(52090199-52090290)
chr3 (168-249)||(42391153-42391234)
chr3 (343-409)||(38516310-38516372)
[»] chr1 (2 HSPs)
chr1 (29-125)||(1747360-1747456)
chr1 (172-249)||(26124497-26124574)
[»] chr8 (1 HSPs)
chr8 (168-249)||(30566767-30566848)
[»] chr4 (3 HSPs)
chr4 (168-249)||(11983317-11983398)
chr4 (168-249)||(43382386-43382467)
chr4 (121-149)||(48341538-48341566)
[»] scaffold0050 (1 HSPs)
scaffold0050 (168-260)||(44316-44408)
[»] chr6 (1 HSPs)
chr6 (168-249)||(9764953-9765034)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 168 - 464
Target Start/End: Complemental strand, 52093428 - 52093132
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgtttagagttt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52093428 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttgagttgtttagagttt 52093329  T
Q  268 tcaaaacttggatattatctaatactaaattagtaaaggttaaagaatacccatggtcttcatttgagggctaccctgttgaatgagatagcacaaacac 367  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  52093328 tcaaaacttggatattatctaatactaaaatagtaaaggttaaagaatacccatggtcttgatttgagggctaccctgttgaatgatatagcacaaacac 52093229  T
Q  368 tcagtctggatccgctgcctttatgctgttggctgcatcacattacagcattccttggtttactagttgcaaagttcaaacagggaatcactttttg 464  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  52093228 tctgtctggatccgctgcctttatactgttggctgcatcacattacagcattccttggtttactagttgcaaagtccacacagggaatcactttttg 52093132  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 52090290 - 52090199
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgtt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  52090290 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttaagttgtt 52090199  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 42391234 - 42391153
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42391234 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 42391153  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 38516310 - 38516372
Alignment:
Q  343 ctgttgaatgagatagcacaaacactcagtctggatccgctgcctttatgctgttggctgcatcaca 409  Q
    ||||||||||| |||||||||||||    |||||||||| |||||| || |||||||| ||||||||    
T  38516310 ctgttgaatgatatagcacaaacac----tctggatccgttgccttgatactgttggcagcatcaca 38516372  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 1747360 - 1747456
Alignment:
Q  29 ataagcaacgttgaaacaatgaaattcacaataataactagttacgtacttgaaatgtgtagacttaaagcgagaggaggggaagatgatatggttg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1747360 ataagcaacgttgaaacaatgaaattcacaataataactagttacatacttgaaatttgtagacttaaagcgagaggaggggaagatgatatggttg 1747456  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 26124497 - 26124574
Alignment:
Q  172 gctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26124497 gctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 26124574  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 30566767 - 30566848
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30566767 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 30566848  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 11983398 - 11983317
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983398 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 11983317  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 43382467 - 43382386
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43382467 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 43382386  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 48341538 - 48341566
Alignment:
Q  121 ggttgatatggacaatacataatatatgc 149  Q
    |||||||||||||||||||||||||||||    
T  48341538 ggttgatatggacaatacataatatatgc 48341566  T

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Target: scaffold0050 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 44408 - 44316
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgttt 260  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  44408 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttgagatgttt 44316  T

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Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 9765034 - 9764953
Alignment:
Q  168 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9765034 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 9764953  T

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