View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_8 (Length: 400)
Name: NF0053_low_8
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 229665 - 229824
Alignment:
| Q |
30 |
gttatataccgatttataaataatgagttagatctaatataaaaaatattaatatgacatggtaaacgttgattttgtaaggaatgtgttaagtccaata |
129 |
Q |
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| T |
229665 |
gttatataccgatttataaataatgagttagatctaatataaaaaatattaatatgacatggtaaacgttgattttgtaagg-atatgttaagtccaata |
229763 |
T |
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| Q |
130 |
ttaaaagctaataataaatagtgatcaagtagagagaagtgaacttacatcatcggtaccg |
190 |
Q |
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| T |
229764 |
ttaaaagctaataataaatagtgatcaagtagagagaagtgaacttacatcatcggtaccg |
229824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 229857 - 229970
Alignment:
| Q |
223 |
tccgggagcgggagcatctgatggcgagagcacaggtgccaatgcaggggctttactcttaagcttggcaggagcgggagttggaggagttgctggagga |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
229857 |
tccgggagcgggagcatctgatggcgagagcacaggtgccaatgcaggggctttactcttaagcttggcaggagcgggagctggagtagttgctggagga |
229956 |
T |
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| Q |
323 |
gatgagagtggagt |
336 |
Q |
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|||||||||||||| |
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| T |
229957 |
gatgagagtggagt |
229970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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