View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-10 (Length: 895)

Name: NF0054-Insertion-10
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-10
NF0054-Insertion-10
[»] chr7 (6 HSPs)
chr7 (127-684)||(30401259-30401833)
chr7 (588-634)||(30916438-30916484)
chr7 (788-822)||(1484178-1484212)
chr7 (788-822)||(5004452-5004486)
chr7 (316-370)||(9268901-9268955)
chr7 (788-822)||(30916246-30916280)
[»] chr8 (10 HSPs)
chr8 (127-296)||(19474527-19474693)
chr8 (127-296)||(19545452-19545618)
chr8 (127-296)||(19587079-19587245)
chr8 (535-634)||(42345401-42345500)
chr8 (533-634)||(42346047-42346148)
chr8 (535-631)||(7054097-7054193)
chr8 (306-370)||(19475147-19475211)
chr8 (306-370)||(19546072-19546136)
chr8 (306-370)||(19586560-19586624)
chr8 (583-634)||(7054759-7054810)
[»] chr4 (10 HSPs)
chr4 (533-683)||(20351203-20351354)
chr4 (533-659)||(39429854-39429980)
chr4 (546-659)||(23424489-23424602)
chr4 (535-634)||(23425149-23425248)
chr4 (535-634)||(39429232-39429331)
chr4 (304-370)||(13921838-13921904)
chr4 (304-370)||(13922543-13922609)
chr4 (588-662)||(34372193-34372267)
chr4 (559-624)||(22061361-22061426)
chr4 (316-370)||(45067731-45067785)
[»] scaffold0318 (2 HSPs)
scaffold0318 (529-684)||(3746-3902)
scaffold0318 (793-822)||(3661-3690)
[»] chr3 (8 HSPs)
chr3 (533-659)||(43768676-43768802)
chr3 (588-634)||(44406257-44406303)
chr3 (588-634)||(47480567-47480613)
chr3 (317-370)||(2949044-2949097)
chr3 (592-631)||(53030974-53031013)
chr3 (305-370)||(10702888-10702953)
chr3 (316-370)||(52696070-52696125)
chr3 (788-822)||(44406461-44406495)
[»] chr2 (10 HSPs)
chr2 (533-659)||(20991936-20992062)
chr2 (535-634)||(20991294-20991393)
chr2 (583-634)||(20244596-20244647)
chr2 (316-370)||(12001085-12001139)
chr2 (317-370)||(38248092-38248145)
chr2 (317-358)||(38248926-38248967)
chr2 (316-355)||(37489198-37489237)
chr2 (316-370)||(42651290-42651344)
chr2 (316-377)||(18883867-18883928)
chr2 (317-370)||(39847135-39847188)
[»] chr5 (6 HSPs)
chr5 (533-659)||(1969784-1969910)
chr5 (588-631)||(18153379-18153422)
chr5 (547-634)||(9924066-9924153)
chr5 (788-822)||(18153183-18153217)
chr5 (533-619)||(9923393-9923479)
chr5 (583-634)||(4606943-4606994)
[»] chr1 (5 HSPs)
chr1 (533-659)||(50428063-50428189)
chr1 (588-632)||(29334891-29334935)
chr1 (316-370)||(1478548-1478602)
chr1 (588-634)||(36385732-36385778)
chr1 (317-370)||(1159078-1159131)
[»] chr6 (1 HSPs)
chr6 (304-370)||(15882155-15882221)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 127 - 684
Target Start/End: Original strand, 30401259 - 30401833
Alignment:
Q  127 caaattgaagcttagttgtcgtcaatattcttgttgaagtttgttttgttagaagtgtgcaggtccatcagtggtagtga-------ggttgtcaagatc 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  30401259 caaattgaagcttagttgtcgtcaatattcttattgaagtttgttttgttagaagtgtgcaggtccatcagtggtagtgactagtgaggttgtcaagatc 30401358  T
Q  220 accactttcatgaattaggtttcggcaaaacctaagagaggagaaaaagtaaaggaaatgatatgcctcaattgaactt-------ttttaagattaatg 312  Q
     |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||  ||||||||||||| |       || | ||||||||     
T  30401359 tccactttcatgaattaggtttcggcaaaacctaaaaaaggagaaaaagaaaaggaaatgatgcgcctcaattgaacatatgggagttgttagattaatt 30401458  T
Q  313 tagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggattttgcctgat--taatttaatgcatcatagaactttttaaga 410  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||| ||  |||||| |||||||||| ||||||||||||    
T  30401459 tagtttaatggttgagatttggtgtaatttattagacttgcatctggtgtcaacggattctgcctcatattaatttgatgcatcataaaactttttaaga 30401558  T
Q  411 caagcattcaattaaatcactctattatgctacttttttaaagtagatgttaaaatacatctttcaatatctacgtaataggatccatgatgtaaaaaga 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |    
T  30401559 caagcattcaattaaatcactctattatgctacttttttaaagtagatgttaaaatacgtctttcaatatctacgtgataggatccatgatgtaaaaaaa 30401658  T
Q  511 gtttacttacactttaaagtgaggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaa 610  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||       |||| ||||||||||| |||||||||||    
T  30401659 gtttacttacactttaaagtgaggtttagtatgggaatggagaattgattcccatcatgggaaagtttttttcaaccattagattaaaatggagtattaa 30401758  T
Q  611 ttttatcatggactacctacacca-nnnnnnnncctttatcttttacactcttacatttctgttaagatctggaa 684  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  30401759 ttttatcatggactacctacaccatatttttttcctttatcttttacactcttacatttctgttaagatctggaa 30401833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 588 - 634
Target Start/End: Complemental strand, 30916484 - 30916438
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30916484 attagattaaagaggagtattaattttatcatggactacctacacca 30916438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 822
Target Start/End: Original strand, 1484178 - 1484212
Alignment:
Q  788 aaagaagtatctaaaatcacttattatctgttcta 822  Q
    |||||||||||||||||||||||||||||||||||    
T  1484178 aaagaagtatctaaaatcacttattatctgttcta 1484212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 822
Target Start/End: Original strand, 5004452 - 5004486
Alignment:
Q  788 aaagaagtatctaaaatcacttattatctgttcta 822  Q
    |||||||||||||||||||||||||||||||||||    
T  5004452 aaagaagtatctaaaatcacttattatctgttcta 5004486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 9268955 - 9268901
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||| |||||||||||||||||||||||  ||||| |||||| |||||||||||    
T  9268955 tttaacggttgagatttggtgtaagttatatgacttacacctggtgtcaacggat 9268901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 822
Target Start/End: Complemental strand, 30916280 - 30916246
Alignment:
Q  788 aaagaagtatctaaaatcacttattatctgttcta 822  Q
    |||||||||||||||||||||||||||||||||||    
T  30916280 aaagaagtatctaaaatcacttattatctgttcta 30916246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 19474693 - 19474527
Alignment:
Q  127 caaattgaagcttagttgtcgtc-aatattcttgttgaagtttgttttgttagaagtgtgcaggtccatcagtggtagtgaggttgtcaagatcaccact 225  Q
    ||||||||||||| | | ||||| ||||||||| ||||| ||| |||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||||    
T  19474693 caaattgaagcttcgctatcgtccaatattcttattgaaatttattttgttagaagtgtgcaagtccatcggtggtagtgaagttgtgaagatctccact 19474594  T
Q  226 ttcatgaattaggtttcggcaaaacctaagagaggagaaaaagtaaaggaaatgatatgcctcaattgaac 296  Q
    |||| ||||||||||||||||||||     ||||||||||||| ||||||| ||||  |||||| ||||||    
T  19474593 ttcacgaattaggtttcggcaaaac----aagaggagaaaaagaaaaggaactgatgcgcctcacttgaac 19474527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 19545618 - 19545452
Alignment:
Q  127 caaattgaagcttagttgtcgtc-aatattcttgttgaagtttgttttgttagaagtgtgcaggtccatcagtggtagtgaggttgtcaagatcaccact 225  Q
    ||||||||||||| | | ||||| ||||||||| ||||| ||| |||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||||    
T  19545618 caaattgaagcttcgctatcgtccaatattcttattgaaatttattttgttagaagtgtgcaagtccatcggtggtagtgaagttgtgaagatctccact 19545519  T
Q  226 ttcatgaattaggtttcggcaaaacctaagagaggagaaaaagtaaaggaaatgatatgcctcaattgaac 296  Q
    |||| ||||||||||||||||||||     ||||||||||||| ||||||| ||||  |||||| ||||||    
T  19545518 ttcacgaattaggtttcggcaaaac----aagaggagaaaaagaaaaggaactgatgcgcctcacttgaac 19545452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 19587079 - 19587245
Alignment:
Q  127 caaattgaagcttagttgtcgtc-aatattcttgttgaagtttgttttgttagaagtgtgcaggtccatcagtggtagtgaggttgtcaagatcaccact 225  Q
    ||||||||||||| | | ||||| ||||||||| ||||| ||| |||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||||    
T  19587079 caaattgaagcttcgctatcgtccaatattcttattgaaatttattttgttagaagtgtgcaagtccatcggtggtagtgaagttgtgaagatctccact 19587178  T
Q  226 ttcatgaattaggtttcggcaaaacctaagagaggagaaaaagtaaaggaaatgatatgcctcaattgaac 296  Q
    |||| ||||||||||||||||||||     ||||||||||||| ||||||| ||||  |||||| ||||||    
T  19587179 ttcacgaattaggtttcggcaaaac----aagaggagaaaaagaaaaggaactgatgcgcctcacttgaac 19587245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 535 - 634
Target Start/End: Original strand, 42345401 - 42345500
Alignment:
Q  535 tttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    ||||| |||| |||||||| ||| || ||||||||||||||       |||| |||||||||| | |||||||||||||||||||||||| |||||||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttatcatggactgcctacacca 42345500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 533 - 634
Target Start/End: Complemental strand, 42346148 - 42346047
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| || ||| ||||||||||       |||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  42346148 ggtttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacac 42346049  T
Q  633 ca 634  Q
    ||    
T  42346048 ca 42346047  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 535 - 631
Target Start/End: Original strand, 7054097 - 7054193
Alignment:
Q  535 tttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctaca 631  Q
    ||||| |||| |||||||| ||| || ||||||||| ||||       |||| |||||||||| | |||||||||||||||||||||||| ||||||    
T  7054097 tttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaggaggagtattaattttatcatggactgcctaca 7054193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 19475147 - 19475211
Alignment:
Q  306 attaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||| || ||||| || |||||||||||| |||| ||||||||| |||||| |||||||||||    
T  19475147 attaatttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19475211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 19546072 - 19546136
Alignment:
Q  306 attaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||| || ||||| || |||||||||||| |||| ||||||||| |||||| |||||||||||    
T  19546072 attaatttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19546136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 19586624 - 19586560
Alignment:
Q  306 attaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||| || ||||| || |||||||||||| |||| ||||||||| |||||| |||||||||||    
T  19586624 attaatttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19586560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 634
Target Start/End: Complemental strand, 7054810 - 7054759
Alignment:
Q  583 caactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||| |||||||||||| ||||||||||||||||||| || | |||||||||    
T  7054810 caaccattagattaaagaggagtattaattttatcatagattgcctacacca 7054759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 7e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 533 - 683
Target Start/End: Complemental strand, 20351354 - 20351203
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    |||||||||||| |||||||| ||| || ||||||||  ||||       ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  20351354 ggtttagtatgggaatggagagttgtttcccaccatgaaaaagtttttttcaactattagattaaagagaagtattaattttatcatggactacctacac 20351255  T
Q  633 ca-nnnnnnnncctttatcttttacactcttacatttctgttaagatctgga 683  Q
    ||         ||||| |||||||||||||||||||||||||||||||||||    
T  20351254 catatttttttcctttctcttttacactcttacatttctgttaagatctgga 20351203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 659
Target Start/End: Complemental strand, 39429980 - 39429854
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| || ||||||||||||||       |||| |||| ||||||| |||||||||||||||||||||| | |||||||    
T  39429980 ggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaagaggagtattaattttatcatggattgcctacac 39429881  T
Q  633 cannnnnnnncctttatcttttacact 659  Q
    ||        |||||||||||||||||    
T  39429880 catattttttcctttatcttttacact 39429854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 546 - 659
Target Start/End: Original strand, 23424489 - 23424602
Alignment:
Q  546 aatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacaccannnnnnnncct 645  Q
    |||||||| ||| ||||||||||| |||||       |||| |||||||||||| |||||||||||||||||||||| | |||||||||        |||    
T  23424489 aatggagagttgttttccaccatgagaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacaccatattttttcct 23424588  T
Q  646 ttatcttttacact 659  Q
    ||||||||||||||    
T  23424589 ttatcttttacact 23424602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 634
Target Start/End: Complemental strand, 23425248 - 23425149
Alignment:
Q  535 tttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||||||||| |||||||| ||| || ||||||||||||||       |||| ||||||||||    ||||||||||||||||||||||| |||||||||    
T  23425248 tttagtatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaagaatgagtattaattttatcatggactgcctacacca 23425149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 634
Target Start/End: Original strand, 39429232 - 39429331
Alignment:
Q  535 tttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    ||||| |||| |||||||| ||| || | ||||||||||||       |||| |||||||||| | |||||||||||||||||||||||| |||||||||    
T  39429232 tttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttatcatggactgcctacacca 39429331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 13921904 - 13921838
Alignment:
Q  304 agattaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||||| ||  |||||||||||||||||||||| || ||||||||| || ||| |||||||||||    
T  13921904 agattaatttaaattaatggttgagatttggtgtatgtcattagacttacatctggtgtcaacggat 13921838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 13922543 - 13922609
Alignment:
Q  304 agattaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||||| ||  ||||||||||||||||||||||||| |||||||||  | ||| |||||||||||    
T  13922543 agattaatttaaattaatggttgagatttggtgtaagtcattagacttagatctggtgtcaacggat 13922609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 662
Target Start/End: Complemental strand, 34372267 - 34372193
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacaccannnnnnnncctttatcttttacactctt 662  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| |        ||||||||||||||||||||    
T  34372267 attagattaaagaggagtattaattttatcatggactgtctacactatattttttcctttatcttttacactctt 34372193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 624
Target Start/End: Original strand, 22061361 - 22061426
Alignment:
Q  559 tttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggact 624  Q
    |||||||||||||||||       |||| |||||||||||| ||||||| ||||||||||||||||    
T  22061361 tttccaccatgggaaagtttttttcaaccattagattaaagaggagtatgaattttatcatggact 22061426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 45067731 - 45067785
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||||||||||||||||||| |||||   ||||| || |||||||||||||||    
T  45067731 tttaatggttgagatttggtgttagttaaaggacttacatctgctgtcaacggat 45067785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 529 - 684
Target Start/End: Complemental strand, 3902 - 3746
Alignment:
Q  529 gtgaggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacct 628  Q
    |||||||||||||||  |||||||| ||| ||||||| |||||||||       |||| |||||||||||  |||||||||||||||||||||| |||||    
T  3902 gtgaggtttagtatgagaatggagagttgttttccacaatgggaaagtttttttcaaccattagattaaaaaggagtattaattttatcatggattacct 3803  T
Q  629 acacca-nnnnnnnncctttatcttttacactcttacatttctgttaagatctggaa 684  Q
    || |||         ||||| ||||||||| ||||||||||||||||||||||||||    
T  3802 actccatatttttttcctttctcttttacattcttacatttctgttaagatctggaa 3746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 822
Target Start/End: Complemental strand, 3690 - 3661
Alignment:
Q  793 agtatctaaaatcacttattatctgttcta 822  Q
    ||||||||||||||||||||||||||||||    
T  3690 agtatctaaaatcacttattatctgttcta 3661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 533 - 659
Target Start/End: Complemental strand, 43768802 - 43768676
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| |||||||||||||||||       |||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  43768802 ggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacac 43768703  T
Q  633 cannnnnnnncctttatcttttacact 659  Q
    ||        |||||||||||||||||    
T  43768702 catattttttcctttatcttttacact 43768676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 634
Target Start/End: Original strand, 44406257 - 44406303
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  44406257 attagattaaagaagagtattaattttatcatggactacctacacca 44406303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 634
Target Start/End: Original strand, 47480567 - 47480613
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  47480567 attaaattaaagaggagtattaattttatcatggactacctacacca 47480613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 2949097 - 2949044
Alignment:
Q  317 ttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  2949097 ttaatagttgagatttggtgtaagtcattagacttacacctggtgtcaacggat 2949044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 53030974 - 53031013
Alignment:
Q  592 gattaaagtggagtattaattttatcatggactacctaca 631  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  53030974 gattaaaggggagtattaattttatcatggactacctaca 53031013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 10702953 - 10702888
Alignment:
Q  305 gattaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||||| || ||||| || ||||||||||||||||| |||||| || |||||| |||||||||||    
T  10702953 gattaatttattttaacggctgagatttggtgtaagtcattagaattacacctggtgtcaacggat 10702888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 52696070 - 52696125
Alignment:
Q  316 tttaatggttgagatttggtgtaag-ttattagacttgcacctgctgtcaacggat 370  Q
    ||||||||||||||||||||||||| || || ||||| |||||| |||||||||||    
T  52696070 tttaatggttgagatttggtgtaagtttttttgacttacacctgttgtcaacggat 52696125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 822
Target Start/End: Original strand, 44406461 - 44406495
Alignment:
Q  788 aaagaagtatctaaaatcacttattatctgttcta 822  Q
    ||||||||||||||||||||||||||| |||||||    
T  44406461 aaagaagtatctaaaatcacttattatatgttcta 44406495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 533 - 659
Target Start/End: Complemental strand, 20992062 - 20991936
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| |||||||||||||||||       |||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  20992062 ggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacac 20991963  T
Q  633 cannnnnnnncctttatcttttacact 659  Q
    ||        |||||||||||||||||    
T  20991962 catattttttcctttatcttttacact 20991936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 535 - 634
Target Start/End: Original strand, 20991294 - 20991393
Alignment:
Q  535 tttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    ||||| |||| |||||||| ||| |||||||||||||||||       |||| |||||||||||   ||||||||||||||||||||||| |||||||||    
T  20991294 tttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaaaatgagtattaattttatcatggactgcctacacca 20991393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 583 - 634
Target Start/End: Complemental strand, 20244647 - 20244596
Alignment:
Q  583 caactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||| |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  20244647 caaccattagattaaagaggagaattaattttatcatggactgcctacacca 20244596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 12001139 - 12001085
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||||||||||||||||||||||||  || ||||| |||||| |||||||||||    
T  12001139 tttaatggttgagatttggtgtaagtcttttgacttacacctggtgtcaacggat 12001085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 38248145 - 38248092
Alignment:
Q  317 ttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||||||||||||| |||||||||||| ||||| || ||| |||||||||||    
T  38248145 ttaatggttgagatttagtgtaagttattcgacttacatctggtgtcaacggat 38248092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 38248926 - 38248967
Alignment:
Q  317 ttaatggttgagatttggtgtaagttattagacttgcacctg 358  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  38248926 ttaatggttgagatttggtgtaagtcattagacttacacctg 38248967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 37489237 - 37489198
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcac 355  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  37489237 tttaatgcttaagatttggtgtaagttattagacttgcac 37489198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 42651290 - 42651344
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||||||||||||||||||||||||  || ||||| |||||| | |||||||||    
T  42651290 tttaatggttgagatttggtgtaagtcttttgacttacacctgatatcaacggat 42651344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 18883867 - 18883928
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggattttgcct 377  Q
    ||||||||||||||||||||| |||| |   ||||| |||||| ||||||||||| ||||||    
T  18883867 tttaatggttgagatttggtgcaagtcaaatgacttacacctggtgtcaacggatcttgcct 18883928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 39847188 - 39847135
Alignment:
Q  317 ttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||| |||||||||||||| ||||| ||| |||||||||||| |||||| ||||    
T  39847188 ttaacggttgagatttggtataagtcatttgacttgcacctggtgtcaatggat 39847135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 659
Target Start/End: Original strand, 1969784 - 1969910
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| |||  ||||||||||||       |||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  1969784 ggtttagcatgggaatggagagttgttttttaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacac 1969883  T
Q  633 cannnnnnnncctttatcttttacact 659  Q
    ||        |||||||||||||||||    
T  1969884 catattttttcctttatcttttacact 1969910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 631
Target Start/End: Complemental strand, 18153422 - 18153379
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctaca 631  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  18153422 attagattaaaaaggagtattaattttatcatggactacctaca 18153379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 634
Target Start/End: Complemental strand, 9924153 - 9924066
Alignment:
Q  547 atggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    ||||||| ||| || ||||||||||||||       |||| |||| ||||| | |||||||||||||||||||||||| |||||||||    
T  9924153 atggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaggaggagtattaattttatcatggactgcctacacca 9924066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 822
Target Start/End: Complemental strand, 18153217 - 18153183
Alignment:
Q  788 aaagaagtatctaaaatcacttattatctgttcta 822  Q
    |||||||||||||||||||||||||||||||||||    
T  18153217 aaagaagtatctaaaatcacttattatctgttcta 18153183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 9923393 - 9923479
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcat 619  Q
    ||||||| |||| |||||||| ||| || ||||||||| ||||       |||| |||||||||||| |||||||||||||||||||    
T  9923393 ggtttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaagaggagtattaattttatcat 9923479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 634
Target Start/End: Original strand, 4606943 - 4606994
Alignment:
Q  583 caactattagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||| |||| ||||||| |||||||||||||||||||||| | |||||||||    
T  4606943 caaccattaaattaaagaggagtattaattttatcatggattgcctacacca 4606994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 533 - 659
Target Start/End: Complemental strand, 50428189 - 50428063
Alignment:
Q  533 ggtttagtatggaaatggagaattgctttccaccatgggaaagnnnnnnncaactattagattaaagtggagtattaattttatcatggactacctacac 632  Q
    ||||||| |||| |||||||| ||| |||||| ||||||||||       |||| |||| ||||||| |||||||||||||||||||||| |  ||||||    
T  50428189 ggtttagaatgggaatggagagttgttttccatcatgggaaagtttttttcaaccattaaattaaagaggagtattaattttatcatggattgtctacac 50428090  T
Q  633 cannnnnnnncctttatcttttacact 659  Q
    ||        |||||||||||||||||    
T  50428089 catattttttcctttatcttttacact 50428063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 632
Target Start/End: Complemental strand, 29334935 - 29334891
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacac 632  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||    
T  29334935 attaaattaaagaggagtattaattttatcatggactatctacac 29334891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 1478548 - 1478602
Alignment:
Q  316 tttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    ||||| ||||||||||||||||||||  || ||||| |||||| |||||||||||    
T  1478548 tttaacggttgagatttggtgtaagtcttttgacttacacctggtgtcaacggat 1478602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 588 - 634
Target Start/End: Original strand, 36385732 - 36385778
Alignment:
Q  588 attagattaaagtggagtattaattttatcatggactacctacacca 634  Q
    |||||||||||| ||||||||||||||||||| | || |||||||||    
T  36385732 attagattaaagaggagtattaattttatcataggctgcctacacca 36385778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 1159131 - 1159078
Alignment:
Q  317 ttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||| ||||||||||||||||||||  || ||||| |||||| |||||||||||    
T  1159131 ttaacggttgagatttggtgtaagtcttttgacttacacctgatgtcaacggat 1159078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 15882221 - 15882155
Alignment:
Q  304 agattaatgtagtttaatggttgagatttggtgtaagttattagacttgcacctgctgtcaacggat 370  Q
    |||||||| ||  |||||||||||||||||||||| || ||||||||| |||||| |||||| ||||    
T  15882221 agattaatttaaattaatggttgagatttggtgtatgtcattagacttacacctggtgtcaatggat 15882155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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