View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0054-Insertion-11 (Length: 880)
Name: NF0054-Insertion-11
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-11 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 13467569 - 13467872
Alignment:
| Q |
9 |
taaatttaaccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaattttt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13467569 |
taaatttaaccaaaaacattaaatggaaatgtttaagggcttaaattttaatcaaatatgaaattatgaacttaattatatcaacaaatcccaaattttt |
13467668 |
T |
|
| Q |
109 |
agggcttcaaagtgtttaagggatcaaattccaacatagctcaccaagcctaagcttgtgcaaaggtgagtgctagcnnnnnnnnnggggtcaattccac |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13467669 |
agggcttcaaagtgtttaagggctcaaattccaacatagctcaccaagcctaagcttgtgcaaaggtgagtgctagcttttttttttgggtcaattccac |
13467768 |
T |
|
| Q |
209 |
catctactagcgggaggctcaattgaagtctgagcaaaacctagtatgaaccgacccaaagatgagtactagctagtttcacaatccaagaaagtcaaaa |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
13467769 |
cgtctactagcgggaggctcaattgaagtcagagtaaaacctagtatgaaccgacccaaagatgagtattagttagtttc-caatccaagaaagtcaaaa |
13467867 |
T |
|
| Q |
309 |
gatat |
313 |
Q |
| |
|
||||| |
|
|
| T |
13467868 |
gatat |
13467872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 395 - 746
Target Start/End: Original strand, 13471624 - 13471991
Alignment:
| Q |
395 |
attcatccagctagcccttaattcaaggacaactaaagttaaaaagattaaggttagaaagaagcataccatttatccacttcaagatgcaagctggcta |
494 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| || ||| ||||||||||||||| |||||| | | ||||||||||||| ||| |||||| |||| | |
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|
| T |
13471624 |
attcatccagccaacccttaattcaaggacaacttaatttacaaagattaaggttaggaagaagaacatcatttatccacttgaagttgcaaggtggcaa |
13471723 |
T |
|
| Q |
495 |
catgga-------aacatgttaaaattccaagttaacaatcacattagtcaac-actcaac---acaatcacaaacaaaataaattatc------cattt |
577 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||| ||||| || | || ||||||||||||||||||||||||| ||||| |
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|
| T |
13471724 |
gctgaattattaaaacatgttaaaattggaagttaacaatcacataggtcaagtacactactcaacaatcacaaacaaaataaattatccatatccattt |
13471823 |
T |
|
| Q |
578 |
gctatatatttagtgatttaaattcaagtattggctaactaacaaatatgcaattcaatgttttaaaagggatcgaaacaaaataaatctttgatgatca |
677 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||| |||| || |||||| |||| ||||| |||| |
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| T |
13471824 |
gctatatatgtagtgatttaaattcatgtcttggctaactaacaaatatgcaattcaatttcttaaaagtgatcaaagcaaaattaatcattgataatca |
13471923 |
T |
|
| Q |
678 |
cagagttcatagagcacaatatgtcactcaccaaactagttgcaaaacctatgaacatatacacttcaa |
746 |
Q |
| |
|
||||| |||||||||||||||| | || ||||||||||||||||||||| ||| || ||| ||||||| |
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|
| T |
13471924 |
cagagctcatagagcacaatatat-gcttaccaaactagttgcaaaacctgtgagcagatatacttcaa |
13471991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 13471432 - 13471579
Alignment:
| Q |
240 |
gagcaaaacctagtatgaaccgacccaaagatgagtactagctagtttcacaatccaagaaagtcaaaagatatacataccagaaaatagtaaacgacac |
339 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| || |
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|
| T |
13471432 |
gagcgaaaccttgtatgaactgacgcaaaggttagtactagctagtttcacaatccaaaaaagtcaaaagatatccataccagaaaataataaacggtac |
13471531 |
T |
|
| Q |
340 |
gatggaattaaaaatggttctctccttgattgtgagacaaaaggttaaa |
388 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
13471532 |
aatcgaattaaaaatggttctctcctt-attgtgtgacaaaaggttaaa |
13471579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 791 - 880
Target Start/End: Original strand, 13467871 - 13467959
Alignment:
| Q |
791 |
atccaaaacaacaaaatccaagtagtcacttaacctatgttcatgtatgtccctttgacaattgctattttcaaaccctatcagtcagtt |
880 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
13467871 |
atccaaaacaacaaaatccaactagtgacttaacctatgttcatgtatgtccc-ttgacaattgctattttcaaaccatatcagtcagtt |
13467959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 5590643 - 5590531
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttttagggctt-c |
116 |
Q |
| |
|
||||| ||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||| ||||||| | || |||||| ||||||| ||||||| | |
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|
| T |
5590643 |
ccaaacacattaaataaaaatgcttgagggcccaaatattaatcaaatatgaaattatgaacataattatgtaaataaatcctaaattttgagggcttcc |
5590544 |
T |
|
| Q |
117 |
aaagtgtttaagg |
129 |
Q |
| |
|
||||| ||||||| |
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|
| T |
5590543 |
aaagtatttaagg |
5590531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 38285091 - 38285002
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttt |
107 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||| ||||| ||||||| | ||||||||||| ||| ||||||||| |||| |
|
|
| T |
38285091 |
ccaaaaacattaaataaaaatgttcaaggggccaaattttaatcaaatctgaaattctaaacttaattatggcaataaatcccaagtttt |
38285002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 845 - 880
Target Start/End: Original strand, 13472021 - 13472056
Alignment:
| Q |
845 |
ttgacaattgctattttcaaaccctatcagtcagtt |
880 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13472021 |
ttgacaattgctattttcaaatcctatcagtcagtt |
13472056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 6021068 - 6021110
Alignment:
| Q |
204 |
tccaccatctactagcgggaggctcaattgaagtctgagcaaa |
246 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
6021068 |
tccaccatccactagcgggaggttcaattgaagtcagagcaaa |
6021110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 33331879 - 33331769
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttttagggcttca |
117 |
Q |
| |
|
||||||||||||| | ||||||| ||||||| || |||||| ||||| ||||||| | |||| ||||||||||| ||||||||||| || ||||||||| |
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|
| T |
33331879 |
ccaaaaacattaattagaaatgtataagggcccaagttttaatcaaatttgaaattcttaactcaattatatcaataaatcccaaatcttgagggcttca |
33331780 |
T |
|
| Q |
118 |
aagtgtttaag |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
33331779 |
aagtgtttaag |
33331769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22728909 - 22729021
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttttagggctt-c |
116 |
Q |
| |
|
||||| ||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||| ||||||| | || |||||| ||||||| ||||||| | |
|
|
| T |
22728909 |
ccaaacacattaaataaaaatgcttgagggcccaaatattaatcaaatatgaaattatgaacataattatgtaaataaatcctaaattttgagggcttcc |
22729008 |
T |
|
| Q |
117 |
aaagtgtttaagg |
129 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
22729009 |
aaagtatttaagg |
22729021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 22720498 - 22720596
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttttagggcttc |
116 |
Q |
| |
|
||||| ||||||||| ||||| || ||||| || |||||| ||||| ||||||||||||||||||||| ||| |||||| ||| ||| |||||||| |
|
|
| T |
22720498 |
ccaaacacattaaataaaaatggttgagggcccaacttttaatcaaatttgaaattatgaacttaattatgccaataaatcctaaaatttgagggcttc |
22720596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 9327128 - 9327058
Alignment:
| Q |
18 |
ccaaaaacattaaatggaaatgtttaagggcttaaattttaaacaaatatgaaattatgaacttaattata |
88 |
Q |
| |
|
|||||| |||||||| |||||||| ||| | |||||||||| ||||| | ||||| |||||||||||||| |
|
|
| T |
9327128 |
ccaaaatcattaaatagaaatgttcaagcacctaaattttaatcaaatttaaaattttgaacttaattata |
9327058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 3504622 - 3504683
Alignment:
| Q |
51 |
aaattttaaacaaatatgaaattatgaacttaattatatcaacaaatcccaaatttttaggg |
112 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
3504622 |
aaattttaatgaaatatgaaattctgaacttaattatatcaataaatcccaaattattaggg |
3504683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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