View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054-Insertion-13 (Length: 878)
Name: NF0054-Insertion-13
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 476 - 878
Target Start/End: Original strand, 43935242 - 43935644
Alignment:
| Q |
476 |
cagaaaaatctttgctcaagagtggtgatttgcaatggtacttctttacccctgtcggaaagaaatattgcacgggagggaggatgaatcgggcaacaga |
575 |
Q |
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| T |
43935242 |
cagaaaaatctttgctcaagagtggtgatttgcaatggtacttctttacccctgtcggaaagaaatattgcacgggagggaggatgaatcgggcaacaga |
43935341 |
T |
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| Q |
576 |
agtaggctactggaagactacagggaaggataggtcgattgaacataggaatcaagtggtggggatgataagaaccctggtgtttcacactggcaaagct |
675 |
Q |
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| T |
43935342 |
agtaggctactggaagactacagggaaggataggtcgattgaacataggaatcaagtggtggggatgataagaaccctggtgtttcacactggcaaagct |
43935441 |
T |
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| Q |
676 |
cctaaaggagaccgaactgattgggttatgcatgaatacagacttgaaaacaaagacctagctgacaatggtgttccacaggtacggcatctttgaatga |
775 |
Q |
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| T |
43935442 |
cctaaaggagaccgaactgattgggttatgcatgaatacagactcgaaaacaaagacctagctgacaatggtgttccacaggtacgacatctttgaatga |
43935541 |
T |
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| Q |
776 |
ggaattatgtttatcaattcgttgtgaactgtttccttggatgtacgtatggttttttatgggctgtgcacgtgatgtctagtactgttgctactattat |
875 |
Q |
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| T |
43935542 |
ggaattatgtttatcaattggttgtgaactgttctgttggatgtacgtatggtgtttaatggcctgtgcacgtgatgtctagtactgttgctgctattat |
43935641 |
T |
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| Q |
876 |
tgc |
878 |
Q |
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| T |
43935642 |
tgc |
43935644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 217 - 403
Target Start/End: Original strand, 43934983 - 43935169
Alignment:
| Q |
217 |
ccatggccgaaacaaaattgatgattccagggtttcgttttcaccccactgatgttgagctggtaatgtattttctcaagaggaagattttgggtagaaa |
316 |
Q |
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| T |
43934983 |
ccatggccgaaacaaaattgatgattccagggtttcgttttcaccccactgatgttgagctggtaatgtattttctcaagaggaagattttgggtagaaa |
43935082 |
T |
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| Q |
317 |
attcccttttaatgtcattgatgaacttgacatttacaagtatgctccatgggatctaccaggtttggattcaatgacactcgagta |
403 |
Q |
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| T |
43935083 |
attcccttttaatgtcattgatgaacttgacatttacaagtatgctccatgggatctaccaggtttggattcaatgacactcgagta |
43935169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 43934858 - 43934911
Alignment:
| Q |
92 |
cacattgttgttgcgcttaaggacctgagtttgtttctgtttgttcaatttggg |
145 |
Q |
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| T |
43934858 |
cacattgttgttgcgcttaaggacctgagtttgtttctgtttgttcaatttggg |
43934911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 39134074 - 39134126
Alignment:
| Q |
328 |
atgtcattgatgaacttgacatttacaagtatgctccatgggatctaccaggt |
380 |
Q |
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| T |
39134074 |
atgtcattgctgaacttgacatatacaaatatgctccttgggatctcccaggt |
39134126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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