View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-14 (Length: 775)

Name: NF0054-Insertion-14
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-14
NF0054-Insertion-14
[»] chr2 (1 HSPs)
chr2 (9-775)||(4414334-4415103)


Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 9 - 775
Target Start/End: Original strand, 4414334 - 4415103
Alignment:
Q  9 acatcgagaaaaataatgatataatggacactaggtagatttattttatgatgttcctcgtcaaacttaaaagaactttatgcaattcaaactcaacttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4414334 acatcgagaaaaataatgatataatggacactaggtagatttattttatgatgttcctcgtcaaacttaaaagaactttatgcaattcaaactcaacttt 4414433  T
Q  109 gaatttcatttaaataatgagagacattgaaatattaaaattatcatgactnnnnnnncaatcaacaccaaacttggttttgtcttcctccatatggttc 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  4414434 gaatttcatttaa-taatgagagacattgaaatattaaaattaccatgactaaaaaaacaatcaacaccaaacttggttttgtcttcctccatatggttc 4414532  T
Q  209 tgaaatgaaatgctcccttttctttggtcatgatttcaaaccacgtgtgactatcgtctatgaggctctaatctcctttggttgaataatagacgaaccc 308  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4414533 tgatatgaaatgttcccttttctttggtcatgatttcaaaccacgtgtgactatcgtctacgaggctctaatctcctttggttgaataatagacgaaccc 4414632  T
Q  309 tttattcatattttttagttaagaagatcttcaaataagatgattaaatagcttaattggtttgaactcaaaatttagaaattataggtttgaatttgcc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4414633 tttattcatattttttagttaagaagatcttcaaataagatgattaaatagcttaattggtttgaactcaaaatttagaaattataggtttgaatttgct 4414732  T
Q  409 aaaaa-tttacacgtacaaatgtgagatccgaattcaacctcaagtgaaagtgttttgtttacaacatcaacattttcacttaaataaaattttacaaat 507  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4414733 aaaaattttacacgtataaatgtgagatccgaattcaacctcaagtgaaagtgttttgtttacaacatcaacattttcacttaaataaaattttacaaat 4414832  T
Q  508 g---nnnnnnnnnnntattgatagaaacattaaaaatcaagtcaaaaacaagttgtagtgaaaagtcaatcaaggacgaagactggtgcaagacttctag 604  Q
    |              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4414833 gaaaaaaaaaaaaattattgatagaaacattaaaaatcaagtcaaaaacaagttgtagtgaaaagtcaatcaaggacgaagactggtgcaagacttctag 4414932  T
Q  605 taactgtgggatccagcaacttttaaaatcctacaaataatgctttcaaatattcaatatccaaatcgcttacgtcacccaactaaaatgaaggatccta 704  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4414933 tacttgtgggatccagcaacttttaaaatcctacaaataatgctttcaaatattcaatatccaaatcgcttacgtcacccaactaaaatgaaggatccta 4415032  T
Q  705 gtgatgccctcaatgacatcacttgtcaagttggcatgtataaattaagcaactagatgttgacttgtcac 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4415033 gtgatgccctcaatgacatcacttgtcaagttggcatgtataaattaagcaactagatgctgacttgtcac 4415103  T

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