View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-15 (Length: 596)

Name: NF0054-Insertion-15
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-15
NF0054-Insertion-15
[»] chr7 (11 HSPs)
chr7 (38-546)||(24617435-24617926)
chr7 (544-596)||(24617955-24618007)
chr7 (427-486)||(39380616-39380675)
chr7 (427-475)||(44819674-44819722)
chr7 (428-479)||(9930399-9930450)
chr7 (427-486)||(12274880-12274939)
chr7 (427-478)||(27165175-27165226)
chr7 (417-486)||(31319587-31319656)
chr7 (431-476)||(35216490-35216535)
chr7 (427-472)||(37930783-37930828)
chr7 (427-479)||(41106094-41106146)
[»] chr5 (7 HSPs)
chr5 (427-486)||(1098698-1098757)
chr5 (427-486)||(15311929-15311988)
chr5 (427-486)||(27895907-27895966)
chr5 (445-484)||(14631031-14631070)
chr5 (448-486)||(5110567-5110605)
chr5 (428-486)||(25713769-25713827)
chr5 (431-472)||(17536940-17536981)
[»] chr1 (13 HSPs)
chr1 (427-486)||(38834621-38834680)
chr1 (427-469)||(3906849-3906891)
chr1 (417-472)||(32796831-32796886)
chr1 (428-486)||(44673897-44673955)
chr1 (428-485)||(5246213-5246270)
chr1 (422-479)||(18607163-18607220)
chr1 (417-486)||(39940557-39940626)
chr1 (427-478)||(14365444-14365495)
chr1 (427-486)||(19580264-19580323)
chr1 (431-476)||(21444218-21444263)
chr1 (445-478)||(39393051-39393084)
chr1 (429-486)||(43318079-43318136)
chr1 (427-479)||(43728196-43728248)
[»] chr4 (17 HSPs)
chr4 (427-486)||(2254024-2254083)
chr4 (427-484)||(3094277-3094334)
chr4 (428-469)||(31280421-31280462)
chr4 (428-469)||(31864337-31864378)
chr4 (417-469)||(19934726-19934778)
chr4 (430-486)||(51313480-51313536)
chr4 (447-486)||(408570-408609)
chr4 (417-476)||(47397880-47397939)
chr4 (427-469)||(6462800-6462842)
chr4 (427-469)||(29006845-29006887)
chr4 (431-469)||(36688381-36688419)
chr4 (430-472)||(48995569-48995611)
chr4 (427-469)||(54164901-54164943)
chr4 (431-472)||(12596690-12596731)
chr4 (445-486)||(17657978-17658019)
chr4 (427-475)||(19936505-19936553)
chr4 (428-472)||(26909675-26909719)
[»] chr8 (7 HSPs)
chr8 (417-483)||(45045451-45045517)
chr8 (416-486)||(37508934-37509005)
chr8 (427-469)||(36696435-36696477)
chr8 (431-472)||(8506302-8506343)
chr8 (427-476)||(35781237-35781286)
chr8 (427-472)||(39099553-39099598)
chr8 (427-479)||(28480717-28480769)
[»] scaffold0014 (1 HSPs)
scaffold0014 (431-472)||(123595-123637)
[»] chr2 (4 HSPs)
chr2 (427-469)||(18009628-18009670)
chr2 (428-469)||(7606233-7606274)
chr2 (422-478)||(11342049-11342105)
chr2 (427-467)||(34359583-34359623)
[»] chr6 (4 HSPs)
chr6 (430-470)||(668208-668248)
chr6 (418-486)||(14173391-14173459)
chr6 (418-486)||(14177927-14177995)
chr6 (428-476)||(32124205-32124253)
[»] chr3 (1 HSPs)
chr3 (430-478)||(24369120-24369167)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 38 - 546
Target Start/End: Original strand, 24617435 - 24617926
Alignment:
Q  38 tctatctcgtgttcaggtgactcttaactcggctgcttgtcgtcctcatctaacaactaagttattttaaggcgtaaacataaataaatgaaggaagtac 137  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||          |||||||||||||||||||||||||    
T  24617435 tctatgtcgtgttcgggtgattcttaactcggctgcttgtcgtccttatctaacaactaagttat----------aaacataaataaatgaaggaagtac 24617524  T
Q  138 gtaaacccctatagtccgtannnnnnnnnnn-gtaagaacaaaaatgaagtgctgat--acagtacaccacaaaatataaaggatttagagaataataat 234  Q
    ||||||||||||||||||||            ||| |||||||| |||||| |||||  ||||||  ||||||||||||||| ||||||| |||||||||    
T  24617525 gtaaacccctatagtccgtataaatttattttgtatgaacaaaagtgaagtactgatgaacagtatgccacaaaatataaagaatttagaaaataataat 24617624  T
Q  235 tgtttatttccgttatcataagttgaatatatattggctgtatgatgcgtcatgtgtctggtccaagtcataggcaggaaggtgaaagaattttcttttt 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||    
T  24617625 tgtttatttccgttatcataagttgaatatatattggctgtatgatg-------tgtctggtccaagtcataagcaggaaggtgaaagaattttcttttt 24617717  T
Q  335 tggtgatggaaggtgaaataatttaatgataggtcttttgtgtagagtatataaatagtgtagagcgcatgatacacatcctcctctgatcgctattata 434  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||    |||  |||||||    
T  24617718 tggagatggaaggtgaaataatttaatgataggtcttttgtgtagagtatataaatagtgtagagcgtataatatacatcatcc---aatcagtattata 24617814  T
Q  435 aacaaaaatgtattttttagattcatttaataaataatatatatagtctatagttgaatgatatgtatggtcttaccactacgttttaccatcctaactc 534  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  24617815 aacaaaaatgtattttttagattcattcaataaataatgtatatagtctatagttgaatgatatgtatggtcttaccactatgttttaccggcctaactc 24617914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 544 - 596
Target Start/End: Original strand, 24617955 - 24618007
Alignment:
Q  544 tttatttttattttagaaaggactatgcatttatacctttgatggaaatgcct 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617955 tttatttttattttagaaaggactatgcatttatacctttgatggaaatgcct 24618007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 39380616 - 39380675
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||| |||| ||||    
T  39380616 ctattataaacaaaattttatattttagattcatttaataaataatatatgtagtttata 39380675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 44819674 - 44819722
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatata 475  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  44819674 ctattataaacaaaaatgtattttttagatttattaaataaatgatata 44819722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 9930399 - 9930450
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataatatatata 479  Q
    |||||||||||||||| ||| ||||||||||||||||| ||| || ||||||    
T  9930399 tattataaacaaaaatttatattttagattcatttaattaattatgtatata 9930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 12274939 - 12274880
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||| ||| | |||||||    
T  12274939 ctattataagcaaaaatgtactttttagattcattcaatatataatgtatgtggtctata 12274880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 478
Target Start/End: Original strand, 27165175 - 27165226
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatat 478  Q
    |||||||||| |||| | ||||||||||||||||||||||||| || |||||    
T  27165175 ctattataaataaaagtctattttttagattcatttaataaattatgtatat 27165226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 31319656 - 31319587
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    |||| |||| |||||||||  |||||| ||||||||||||||||| || |||| || ||| |||||||||    
T  31319656 cctccgatcactattataaggaaaaatatattttttagattcattcaaaaaatgatgtatgtagtctata 31319587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 35216490 - 35216535
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaataatatat 476  Q
    ||||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  35216490 tataaacaaaaatttatattttagattcattcaataaatgatatat 35216535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 37930828 - 37930783
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    |||||||||||||||||  || |||||||||||||| |||||||||    
T  37930828 ctattataaacaaaaattaatattttagattcatttgataaataat 37930783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 41106094 - 41106146
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatata 479  Q
    |||| |||||||||||| ||| ||||| ||||||||||| |||||| ||||||    
T  41106094 ctataataaacaaaaatctatattttaaattcatttaattaataatgtatata 41106146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 1098757 - 1098698
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||| ||| |||||||||    
T  1098757 ctattataagcaaaagtttattttttagattcatttaataaataatgtatgtagtctata 1098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 15311988 - 15311929
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    |||||||||  |||||| ||||||||||||||||||||||||| || |||||| ||||||    
T  15311988 ctattataaggaaaaatctattttttagattcatttaataaatgatgtatataatctata 15311929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 27895907 - 27895966
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||| |  |||||||||||||||||||||||| || ||| |||||||||    
T  27895907 ctattataaacaaaagttcattttttagattcatttaataaatgatgtatgtagtctata 27895966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 484
Target Start/End: Original strand, 14631031 - 14631070
Alignment:
Q  445 tattttttagattcatttaataaataatatatatagtcta 484  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  14631031 tattttttagattcattgaataaataatatatgtagtcta 14631070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 5110567 - 5110605
Alignment:
Q  448 tttttagattcatttaataaataatatatatagtctata 486  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  5110567 tttttagattcattcaataaataatatatataatctata 5110605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 25713827 - 25713769
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    |||||||||||||| |  |||||||||||||||| ||||||| |||||| | |||||||    
T  25713827 tattataaacaaaagttgattttttagattcattcaataaatgatatatgtggtctata 25713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 17536940 - 17536981
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||    
T  17536940 tataaacaacaatttattttttagattcattaaataaataat 17536981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 38834621 - 38834680
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||| || |||||||||||||    
T  38834621 ctattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctata 38834680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 3906891 - 3906849
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  3906891 ctattataaacaaaaatttattttttagattcatttaataaat 3906849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 32796886 - 32796831
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    |||| |||| |||||||||||||||||  | |||||||||||||||||||||||||    
T  32796886 cctccgatcactattataaacaaaaattcactttttagattcatttaataaataat 32796831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 44673897 - 44673955
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    |||||||||||||||| |||||||||| || ||||||||||| |||||| | |||||||    
T  44673897 tattataaacaaaaatttattttttaggtttatttaataaatgatatatgtggtctata 44673955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 485
Target Start/End: Complemental strand, 5246270 - 5246213
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctat 485  Q
    |||||||||||||||  ||||||||||||||||| ||||||| || ||| ||||||||    
T  5246270 tattataaacaaaaaactattttttagattcattgaataaatgatgtatgtagtctat 5246213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 18607220 - 18607163
Alignment:
Q  422 gatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatata 479  Q
    |||| ||||||||||||||||| ||| ||||| ||||||| ||| |||||||||||||    
T  18607220 gatcactattataaacaaaaatctatattttaaattcattcaattaataatatatata 18607163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 39940626 - 39940557
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    |||| |||| |||||||||  |||||| || |||||||||||||| |||||||||| ||| |||||||||    
T  39940626 cctccgatcactattataagtaaaaatttactttttagattcattcaataaataatgtatgtagtctata 39940557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 478
Target Start/End: Complemental strand, 14365495 - 14365444
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatat 478  Q
    ||||||||||||||||| ||| ||||| ||||||||||| ||| ||||||||    
T  14365495 ctattataaacaaaaatatatattttatattcatttaattaatgatatatat 14365444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 19580323 - 19580264
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| || ||| |||| ||||    
T  19580323 ctattataaacaaaagtatattttttagattcattcaataaatgatgtatgtagtgtata 19580264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 21444218 - 21444263
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaataatatat 476  Q
    ||||| |||||||  || ||||||||||||||||||||||||||||    
T  21444218 tataagcaaaaatacatattttagattcatttaataaataatatat 21444263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 39393084 - 39393051
Alignment:
Q  445 tattttttagattcatttaataaataatatatat 478  Q
    ||||||||||||||||| ||||||||||||||||    
T  39393084 tattttttagattcattcaataaataatatatat 39393051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 43318136 - 43318079
Alignment:
Q  429 attataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||| ||| |||  |||||||||||||||||||||||| ||||| || |||||||    
T  43318136 attataagcaagaattcattttttagattcatttaataaatgatatacatggtctata 43318079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 43728196 - 43728248
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatata 479  Q
    ||||||||||||||||| ||| |||||| || ||||||| ||| |||||||||    
T  43728196 ctattataaacaaaaatctatattttaggttaatttaattaatgatatatata 43728248  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 2254083 - 2254024
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||| | ||||||||| ||||||| ||||||| |||||| |||||||||    
T  2254083 ctattataaacaaaagtttattttttaaattcattcaataaatgatatatgtagtctata 2254024  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 484
Target Start/End: Original strand, 3094277 - 3094334
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtcta 484  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||| || ||||| |||||    
T  3094277 ctattataaacaaaaatttattttttatattcattcaataaatgatgtatatggtcta 3094334  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 31280462 - 31280421
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  31280462 tattataaacaaaaatttattttttaggttcatttaataaat 31280421  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 31864378 - 31864337
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  31864378 tattataaataaaaatttattttttagattcatttaataaat 31864337  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 19934778 - 19934726
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    |||| |||| ||||||||| ||||||| ||||||||||||||||| |||||||    
T  19934778 cctccgatcactattataagcaaaaatctattttttagattcattcaataaat 19934726  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 51313480 - 51313536
Alignment:
Q  430 ttataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||||| ||||||| |||||| |||| ||||| ||| |||||||||    
T  51313480 ttataaacaaaaatgtactttttagcttcattgaatacataatgtatttagtctata 51313536  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 486
Target Start/End: Original strand, 408570 - 408609
Alignment:
Q  447 ttttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  408570 ttttttagattcattgaataaataatatatatggtctata 408609  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 47397880 - 47397939
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatat 476  Q
    |||||||||  ||||||||||| || | ||||||||||||| ||| ||||||||||||||    
T  47397880 cctctgatcattattataaacagaattttattttttagatttattcaataaataatatat 47397939  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 6462842 - 6462800
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||||||||| | ||||||||||||||||| |||||||    
T  6462842 ctattataaacaaaattttattttttagattcattcaataaat 6462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 29006845 - 29006887
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  29006845 ctattataagcaaaaatctattttttagattcattcaataaat 29006887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 36688381 - 36688419
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  36688381 tataaacaaaaatctattttttaggttcatttaataaat 36688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 48995569 - 48995611
Alignment:
Q  430 ttataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    |||||||||||| | ||| ||||||||||||||||||||||||    
T  48995569 ttataaacaaaattttatattttagattcatttaataaataat 48995611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 54164943 - 54164901
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  54164943 ctattataagcaaaaatctattttttagattcattcaataaat 54164901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 12596690 - 12596731
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||    
T  12596690 tataagcaaaaatttattttttaaattcatttaataaataat 12596731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 17658019 - 17657978
Alignment:
Q  445 tattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||||||||| ||||||| |||||| |||||||||    
T  17658019 tattttttagattcattcaataaatgatatatgtagtctata 17657978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 19936505 - 19936553
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatata 475  Q
    |||||||||||||||||  | |||||||||||||| ||||||| |||||    
T  19936505 ctattataaacaaaaatcaactttttagattcattgaataaattatata 19936553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 26909675 - 26909719
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||    
T  26909675 tattataagtaaaaattaattttttagattcatttaataaataat 26909719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 45045517 - 45045451
Alignment:
Q  417 cctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtct 483  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||| ||| ||| || ||||| ||||    
T  45045517 cctctgatcactattataaacaaaaatctatattttagattcattcaattaatgatgtatatggtct 45045451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 486
Target Start/End: Original strand, 37508934 - 37509005
Alignment:
Q  416 tcctctgatcgctattataaacaaaaatgt-attttttagattcatttaataaataatatatatagtctata 486  Q
    ||||||||||  |||||||||||||||  | |||||||| ||||||| |||||||||||||| |||| ||||    
T  37508934 tcctctgatcattattataaacaaaaaattcattttttaaattcattcaataaataatatatgtagtatata 37509005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 36696435 - 36696477
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    |||||||||| |||||| |||||||||| ||||||||||||||    
T  36696435 ctattataaataaaaatttattttttaggttcatttaataaat 36696477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 8506343 - 8506302
Alignment:
Q  431 tataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||    
T  8506343 tataaacaaaaatttatgttttagattcattcaataaataat 8506302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 35781237 - 35781286
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatat 476  Q
    ||||||||||||||| | |||||||||| |||||| ||||||| ||||||    
T  35781237 ctattataaacaaaattttattttttaggttcattcaataaatgatatat 35781286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 39099553 - 39099598
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataat 472  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||||||    
T  39099553 ctattataagcaaaaatgcattttttagatttattgaataaataat 39099598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 28480769 - 28480717
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaataatatatata 479  Q
    ||||||||| |||||||||||||| || ||||||| ||||||| || ||||||    
T  28480769 ctattataagcaaaaatgtattttctaaattcattcaataaattatgtatata 28480717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 123637 - 123595
Alignment:
Q  431 tataaacaaaaatgtattttttagattc-atttaataaataat 472  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  123637 tataaacaaaaatgtattttttagattcaatttaatcaataat 123595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 18009628 - 18009670
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    |||||||||| |||||| |||||||||||||||||| ||||||    
T  18009628 ctattataaataaaaatctattttttagattcatttgataaat 18009670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 7606274 - 7606233
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaat 469  Q
    ||||||||||||| || |||||||||| ||||||||||||||    
T  7606274 tattataaacaaagatctattttttaggttcatttaataaat 7606233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 11342105 - 11342049
Alignment:
Q  422 gatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatat 478  Q
    |||| ||||||||| ||||||| ||| ||||||||||||||||| ||| || |||||    
T  11342105 gatcactattataagcaaaaatctatattttagattcatttaattaatgatgtatat 11342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 34359583 - 34359623
Alignment:
Q  427 ctattataaacaaaaatgtattttttagattcatttaataa 467  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  34359583 ctattataaacaaaaaattattttttagattcattaaataa 34359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 668248 - 668208
Alignment:
Q  430 ttataaacaaaaatgtattttttagattcatttaataaata 470  Q
    |||||| ||||||||||||||| | ||||||||||||||||    
T  668248 ttataagcaaaaatgtatttttaatattcatttaataaata 668208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 14173391 - 14173459
Alignment:
Q  418 ctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||| || ||||||||| ||||||| || |||||||||||||| ||||||| |  ||| |||||||||    
T  14173391 ctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctata 14173459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 14177927 - 14177995
Alignment:
Q  418 ctctgatcgctattataaacaaaaatgtattttttagattcatttaataaataatatatatagtctata 486  Q
    ||||| || ||||||||| ||||||| || |||||||||||||| ||||||| |  ||| |||||||||    
T  14177927 ctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctata 14177995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 32124253 - 32124205
Alignment:
Q  428 tattataaacaaaaatgtattttttagattcatttaataaataatatat 476  Q
    |||||||| |||||||  | |||||||||||||| ||||||||||||||    
T  32124253 tattataagcaaaaattgactttttagattcattcaataaataatatat 32124205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 478
Target Start/End: Original strand, 24369120 - 24369167
Alignment:
Q  430 ttataaacaaaaatgtattttttagattcatttaataaataatatatat 478  Q
    |||||||||||| | ||||||||||||||||| |||||||||| |||||    
T  24369120 ttataaacaaaa-tctattttttagattcattcaataaataatgtatat 24369167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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