View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054-Insertion-17 (Length: 500)
Name: NF0054-Insertion-17
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 46471726 - 46471248
Alignment:
| Q |
9 |
tcatttttagacctgcttttaaattgaaaaacatttttccttcaaaaagacagaatcctggcattagatactcaagcacaggcacacacacaataccatt |
108 |
Q |
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| T |
46471726 |
tcatttttaggcctgcttttaaattgaaaaacatttttccttcaaaaagacagaatcctggcattagatactcaagcacaggcacacacacaataccatt |
46471627 |
T |
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| Q |
109 |
cataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtggcctagaatctccctctcatcttgtaat |
208 |
Q |
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| T |
46471626 |
cataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttga--------------atctccctctcatcttgtaat |
46471541 |
T |
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| Q |
209 |
actgtattttcagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcacatttatgtttcttgatgatggcta |
308 |
Q |
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| T |
46471540 |
actgtatttacagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcacatttatgtttcttgatgatggcca |
46471441 |
T |
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| Q |
309 |
atttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaattctaatcaggaaaccgagtata |
408 |
Q |
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| T |
46471440 |
atttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaattctaatcaggaaaccgagtata |
46471341 |
T |
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| Q |
409 |
acccaaggttctaagcaggaaactccaaaaattacagt-gagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcat |
500 |
Q |
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| T |
46471340 |
acccaaggttctaagcaggaaactccaaaaattacagtagagtaatgagtatagctctaatctgtgaaccggtcatttttggatgaattgcat |
46471248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 1475311 - 1475170
Alignment:
| Q |
98 |
acaataccattcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtggcctagaatctccctct |
197 |
Q |
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| T |
1475311 |
acaataacagtcataaagtttatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgataatgtggcccagaaactccctct |
1475212 |
T |
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| Q |
198 |
catcttgtaatactgtattttcagcaacctataacataaaat |
239 |
Q |
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| T |
1475211 |
cgtcttgcaatactgtatttacagcaacctataacatgaaat |
1475170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 1474954 - 1474874
Alignment:
| Q |
419 |
ctaagcaggaaactccaaaaattacagtgagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcat |
500 |
Q |
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| T |
1474954 |
ctaagcaggaaactacaaaaatta-agcaagcaatgagtgtagctctaatctgtgactcaatcatttttggatgaattgcat |
1474874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 20743878 - 20743959
Alignment:
| Q |
108 |
tcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtggcctagaat |
189 |
Q |
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| T |
20743878 |
tcataaagtttatgcaagttaaaggaactcacggtggggtcaggcacttcatatttgtagacttgataatgtggcccagaat |
20743959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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