View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-21 (Length: 380)

Name: NF0054-Insertion-21
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-21
NF0054-Insertion-21
[»] chr4 (1 HSPs)
chr4 (9-380)||(1718596-1718968)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 1718968 - 1718596
Alignment:
Q  9 gaggtttcctaggcaatcaattgtgtgtgtatttactatctatattatgatagctaaataaattaaacaaatgacaagttggaatggtaaacattttaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718968 gaggtttcctaggcaatcaattgtgtgtgtatttactatctatattatgatagctaaataaattaaacaaatgacaagttggaatggtaaacattttaaa 1718869  T
Q  109 aattccattgtcatggctattgtgaatnnnnnnnnnnctattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgc 208  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718868 aattccattgtcatggctattgtgaataaaaaaaaaactattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgc 1718769  T
Q  209 aattgcaatctgtcattttcgccttctttccctactttcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718768 aattgcaatctgtcattttcgccttctttccctactttcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattag 1718669  T
Q  309 aagttagaaccttcccttaaaaaagaaactagaacc-nnnnnnnnaaggaagaaactagaaccttgttatgtc 380  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  1718668 aagttagaaccttcccttaaaaaagaaactagaacctttttttttaaggaagaaactagaaccttgttatgtc 1718596  T

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