View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054-Insertion-21 (Length: 380)
Name: NF0054-Insertion-21
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 1718968 - 1718596
Alignment:
| Q |
9 |
gaggtttcctaggcaatcaattgtgtgtgtatttactatctatattatgatagctaaataaattaaacaaatgacaagttggaatggtaaacattttaaa |
108 |
Q |
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| T |
1718968 |
gaggtttcctaggcaatcaattgtgtgtgtatttactatctatattatgatagctaaataaattaaacaaatgacaagttggaatggtaaacattttaaa |
1718869 |
T |
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| Q |
109 |
aattccattgtcatggctattgtgaatnnnnnnnnnnctattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgc |
208 |
Q |
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| T |
1718868 |
aattccattgtcatggctattgtgaataaaaaaaaaactattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgc |
1718769 |
T |
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| Q |
209 |
aattgcaatctgtcattttcgccttctttccctactttcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattag |
308 |
Q |
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| T |
1718768 |
aattgcaatctgtcattttcgccttctttccctactttcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattag |
1718669 |
T |
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| Q |
309 |
aagttagaaccttcccttaaaaaagaaactagaacc-nnnnnnnnaaggaagaaactagaaccttgttatgtc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1718668 |
aagttagaaccttcccttaaaaaagaaactagaacctttttttttaaggaagaaactagaaccttgttatgtc |
1718596 |
T |
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