View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0054-Insertion-22 (Length: 265)
Name: NF0054-Insertion-22
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 45240543 - 45240667
Alignment:
| Q |
105 |
cgtccaattttggatgtggcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttgtgttagaatgtcttagataat |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45240543 |
cgtccaactttggatgtggcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttatgttagaatgtcttagataat |
45240642 |
T |
|
| Q |
205 |
tggcattgaagaatggtagccaaac |
229 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45240643 |
tggcattgaagaatggtagccaaac |
45240667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 23869652 - 23869758
Alignment:
| Q |
123 |
gcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttgtgttagaatgtcttagataattggcattgaagaatggta |
222 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||| || || |||| ||| ||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
23869652 |
gcactaagagcatcaatatcgcatgtatattgtcgtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagta |
23869751 |
T |
|
| Q |
223 |
gccaaac |
229 |
Q |
| |
|
||||||| |
|
|
| T |
23869752 |
gccaaac |
23869758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 18565565 - 18565630
Alignment:
| Q |
164 |
cacaatattcaatgtctttgtgttagaatgtcttagataattggcattgaagaatggtagccaaac |
229 |
Q |
| |
|
||||||| |||||||||||||| | ||| |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
18565565 |
cacaataaccaatgtctttgtgtcacaatatcttggataattggcattgaagaagagtagccaaac |
18565630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1100 times since January 2019
Visitors: 1291