View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-23 (Length: 165)

Name: NF0054-Insertion-23
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-23
NF0054-Insertion-23
[»] chr7 (15 HSPs)
chr7 (9-165)||(19992408-19992565)
chr7 (9-165)||(21812071-21812229)
chr7 (11-165)||(24266033-24266189)
chr7 (11-165)||(24261154-24261310)
chr7 (20-144)||(31109438-31109563)
chr7 (11-165)||(16880170-16880327)
chr7 (20-144)||(24024181-24024306)
chr7 (11-154)||(16885026-16885172)
chr7 (20-144)||(12406437-12406562)
chr7 (25-144)||(12397022-12397142)
chr7 (94-144)||(20357359-20357409)
chr7 (94-135)||(1533265-1533306)
chr7 (94-135)||(2058203-2058244)
chr7 (95-144)||(4873310-4873359)
chr7 (50-88)||(1533364-1533402)
[»] chr5 (21 HSPs)
chr5 (11-165)||(37556457-37556610)
chr5 (11-165)||(37561279-37561432)
chr5 (11-165)||(28807408-28807561)
chr5 (11-165)||(33791414-33791570)
chr5 (11-165)||(2785473-2785629)
chr5 (11-165)||(31396822-31396980)
chr5 (11-165)||(31401679-31401837)
chr5 (9-121)||(15044781-15044893)
chr5 (11-165)||(33768277-33768438)
chr5 (20-144)||(1457016-1457141)
chr5 (20-144)||(27445076-27445201)
chr5 (20-144)||(27449920-27450045)
chr5 (20-144)||(43592385-43592510)
chr5 (20-144)||(43598830-43598955)
chr5 (20-144)||(43604322-43604447)
chr5 (20-144)||(43609814-43609939)
chr5 (20-88)||(30631513-30631582)
chr5 (94-144)||(30631641-30631691)
chr5 (94-144)||(31180448-31180498)
chr5 (94-134)||(24136081-24136121)
chr5 (20-87)||(31180321-31180388)
[»] scaffold0464 (1 HSPs)
scaffold0464 (9-165)||(457-613)
[»] chr1 (11 HSPs)
chr1 (9-165)||(1054846-1055002)
chr1 (9-165)||(25444923-25445079)
chr1 (9-165)||(39445594-39445750)
chr1 (13-165)||(25439730-25439882)
chr1 (9-165)||(44023708-44023864)
chr1 (11-165)||(43988293-43988451)
chr1 (20-144)||(41390686-41390811)
chr1 (20-144)||(41398341-41398466)
chr1 (94-135)||(24202593-24202634)
chr1 (94-144)||(24787176-24787226)
chr1 (20-88)||(24787285-24787354)
[»] chr8 (19 HSPs)
chr8 (9-165)||(39784657-39784813)
chr8 (11-165)||(35745489-35745645)
chr8 (11-165)||(10684095-10684251)
chr8 (20-165)||(25328112-25328258)
chr8 (20-144)||(7289780-7289905)
chr8 (81-165)||(25327986-25328070)
chr8 (27-88)||(18870482-18870544)
chr8 (94-144)||(6311533-6311583)
chr8 (27-88)||(18853088-18853150)
chr8 (94-144)||(18870373-18870423)
chr8 (27-88)||(30655760-30655822)
chr8 (94-144)||(30655881-30655931)
chr8 (27-88)||(36979491-36979553)
chr8 (94-135)||(10688961-10689002)
chr8 (94-135)||(33037629-33037670)
chr8 (94-128)||(1261785-1261819)
chr8 (94-144)||(18852979-18853029)
chr8 (20-88)||(6311404-6311472)
chr8 (94-135)||(36979612-36979652)
[»] chr6 (13 HSPs)
chr6 (9-165)||(6438595-6438751)
chr6 (20-165)||(28155404-28155549)
chr6 (11-165)||(6005515-6005671)
chr6 (11-165)||(33330276-33330432)
chr6 (11-165)||(33335773-33335929)
chr6 (11-165)||(16838842-16838998)
chr6 (20-144)||(14737431-14737556)
chr6 (20-144)||(14742291-14742416)
chr6 (20-144)||(11857080-11857205)
chr6 (20-144)||(22010551-22010676)
chr6 (20-116)||(28184610-28184707)
chr6 (64-165)||(5343628-5343731)
chr6 (94-135)||(5674591-5674632)
[»] chr4 (12 HSPs)
chr4 (9-165)||(18855821-18855977)
chr4 (9-165)||(3814119-3814274)
chr4 (9-165)||(5732760-5732915)
chr4 (9-165)||(45357130-45357286)
chr4 (20-165)||(45347650-45347796)
chr4 (20-144)||(9224261-9224386)
chr4 (20-144)||(9229048-9229173)
chr4 (20-144)||(51520563-51520688)
chr4 (27-88)||(24742054-24742116)
chr4 (94-135)||(24742175-24742216)
chr4 (94-144)||(18712620-18712670)
chr4 (50-88)||(29760780-29760818)
[»] chr3 (20 HSPs)
chr3 (20-165)||(18656540-18656685)
chr3 (11-165)||(2676918-2677074)
chr3 (11-165)||(2672762-2672918)
chr3 (11-165)||(8512315-8512471)
chr3 (11-165)||(8517195-8517351)
chr3 (11-165)||(24968205-24968361)
chr3 (11-165)||(32475581-32475738)
chr3 (11-165)||(32480439-32480596)
chr3 (20-144)||(22173049-22173174)
chr3 (27-88)||(7167358-7167420)
chr3 (20-88)||(28501618-28501687)
chr3 (20-88)||(28503785-28503854)
chr3 (94-144)||(28501509-28501559)
chr3 (94-135)||(2671407-2671448)
chr3 (94-135)||(8477599-8477640)
chr3 (94-135)||(40372617-40372658)
chr3 (94-128)||(8738891-8738925)
chr3 (94-128)||(9091129-9091163)
chr3 (94-144)||(28503676-28503726)
chr3 (94-144)||(7167479-7167530)
[»] chr2 (9 HSPs)
chr2 (11-165)||(19344519-19344676)
chr2 (11-165)||(19349377-19349534)
chr2 (9-161)||(32246883-32247035)
chr2 (20-144)||(39811843-39811968)
chr2 (27-88)||(11098848-11098910)
chr2 (94-135)||(11098748-11098789)
chr2 (94-134)||(14291723-14291763)
chr2 (94-123)||(9296235-9296264)
chr2 (20-48)||(44312575-44312603)
[»] scaffold0197 (2 HSPs)
scaffold0197 (11-165)||(14140-14296)
scaffold0197 (11-165)||(18996-19152)
[»] scaffold0259 (1 HSPs)
scaffold0259 (11-165)||(2082-2238)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-165)||(148787-148943)
[»] scaffold0355 (2 HSPs)
scaffold0355 (20-144)||(3703-3827)
scaffold0355 (20-128)||(9514-9622)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-165)||(176808-176936)
[»] scaffold0135 (1 HSPs)
scaffold0135 (20-144)||(34916-35041)
[»] scaffold0188 (2 HSPs)
scaffold0188 (94-128)||(17783-17817)
scaffold0188 (94-128)||(23876-23910)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 3e-77; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 19992408 - 19992565
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19992408 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 19992507  T
Q  109 atgttttt-cccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19992508 atgtttttccccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 19992565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 21812229 - 21812071
Alignment:
Q  9 actctagcttatcaa-gctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattac 107  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21812229 actctagcttgtcaaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaacccataatcccaaggtgattac 21812130  T
Q  108 aatgttttt-cccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  21812129 aatgtttttccccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 21812071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 24266189 - 24266033
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  24266189 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 24266090  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  24266089 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 24266033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 24261310 - 24261154
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||| ||||||||||    
T  24261310 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaagatgattacaat 24261211  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  24261210 gttgttttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatccc 24261154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 31109563 - 31109438
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31109563 tcaagctttgcacatgaacaaaccctagattctaccctttgatattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttcc 31109464  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  31109463 caacccaagagacactctcaacaaag 31109438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 16880170 - 16880327
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtat-tttcccactctcacactatgaacccaaaatcccaaggtgattacaa 109  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||||| ||  |||||||  ||||||||||||||||| ||||||||| |||||||||    
T  16880170 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaa 16880269  T
Q  110 tgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||  |||| |||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  16880270 tgttgtttttccaacctaagattcactctcatcaaaggaacacaccccaaaggatccc 16880327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 24024306 - 24024181
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||    
T  24024306 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacacgatgaaccctaaaacccacggtgattacaatgtttttcc 24024207  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
     |||| |||| |||||| || |||||    
T  24024206 aaacccaagagacactctcaacaaag 24024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 16885026 - 16885172
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtat-tttcccactctcacactatgaacccaaaatcccaaggtgattacaa 109  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||||| ||  |||||||  ||||||||||||||||| ||||||||| |||||||||    
T  16885026 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaa 16885125  T
Q  110 tgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccc 154  Q
    |||  ||||||||||||||||  ||||| ||||||||||||||||||    
T  16885126 tgttgttttcccaacctaagattcactctcatcaaaggaacacaccc 16885172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 12406437 - 12406562
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||| ||||||||| |||  ||||||||||||||||||||||||    
T  12406437 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaagccaaggtgattacaatgtttttcc 12406536  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  12406537 caacccaagagacactctcaacaaag 12406562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 12397022 - 12397142
Alignment:
Q  25 ctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcccaacc 123  Q
    ||||||||||||||||||||||||  |||||||||||| ||| |||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  12397022 ctttacacatgaacaaaccctagattctaccctttggtgtttccccactatcacaatatgaaccctaaaacccaaggtgattacaatgtttttcccaacc 12397121  T
Q  124 taagaaacactcacatcaaag 144  Q
     |||| |||||| || |||||    
T  12397122 caagagacactctcaacaaag 12397142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 20357409 - 20357359
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  20357409 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 20357359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 1533306 - 1533265
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  1533306 cccaaggtgattacaatgtttttcccaacccaagagacactc 1533265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 2058203 - 2058244
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  2058203 cccaaggtgattacaatgtttttcccaacccaagagacactc 2058244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 4873310 - 4873359
Alignment:
Q  95 ccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    ||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  4873310 ccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 4873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 1533402 - 1533364
Alignment:
Q  50 ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  1533402 ctaccctttggtgttttcccactctcacaatatgaaccc 1533364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 2e-75; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 37556610 - 37556457
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37556610 tctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 37556511  T
Q  111 gtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37556510 g-ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 37556457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 37561432 - 37561279
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561432 tctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 37561333  T
Q  111 gtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561332 g-ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 37561279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 28807561 - 28807408
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28807561 tctagctt-tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 28807463  T
Q  111 gtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  28807462 gtttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 28807408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 33791414 - 33791570
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  33791414 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 33791513  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33791514 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 33791570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 2785473 - 2785629
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  2785473 tctagcttttcaagctttactcatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 2785572  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2785573 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 2785629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 31396980 - 31396822
Alignment:
Q  11 tctagcttatcaagctttacacatga--acaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    ||||||||||||||||||||||| ||  | |||||||||| ||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  31396980 tctagcttatcaagctttacacaagacaaaaaaccctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattaca 31396881  T
Q  109 atgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  31396880 atgttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 31396822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 31401837 - 31401679
Alignment:
Q  11 tctagcttatcaagctttacacatga--acaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    ||||||||||||||||||||||| ||  | |||| ||||| ||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  31401837 tctagcttatcaagctttacacaagacaaaaaactctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattaca 31401738  T
Q  109 atgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  31401737 atgttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 31401679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 15044781 - 15044893
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattac 107  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  15044781 actctagctt-tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattac 15044879  T
Q  108 aatgtttttcccaa 121  Q
    ||||||||||||||    
T  15044880 aatgtttttcccaa 15044893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 33768277 - 33768438
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttgg--tattttccca--ctctc-acactatgaacccaaaatcccaaggtgatt 105  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |  |||||||||   | ||| |||||||||||| | |||||||||||||||    
T  33768277 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttcggttattttccctacccctccacactatgaaccaataatcccaaggtgatt 33768376  T
Q  106 acaatgtt--tttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33768377 acaatgttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 33768438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 1457141 - 1457016
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  1457141 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgtttttcc 1457042  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  1457041 caacccaagagacactctcaacaaag 1457016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 27445076 - 27445201
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  27445076 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 27445175  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  27445176 caacccaagagacactctcaacaaag 27445201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 27449920 - 27450045
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  27449920 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 27450019  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  27450020 caacccaagagacactctcaacaaag 27450045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43592385 - 43592510
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  43592385 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 43592484  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  43592485 caacccaagagacactctcaacaaag 43592510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43598830 - 43598955
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  43598830 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 43598929  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  43598930 caacccaagagacactctcaacaaag 43598955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43604322 - 43604447
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  43604322 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 43604421  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  43604422 caacccaagagacactctcaacaaag 43604447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43609814 - 43609939
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  43609814 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 43609913  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  43609914 caacccaagagacactctcaacaaag 43609939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 30631513 - 30631582
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||||||||||||||| ||||  |||||||||||| ||| |||||||||||| |||||||||    
T  30631513 tcaagctttacacatgaacaaaccatagattctaccctttggtgtttccccactctcacaatatgaaccc 30631582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 30631641 - 30631691
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  30631641 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 30631691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 31180448 - 31180498
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  31180448 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 31180498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 24136081 - 24136121
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacact 134  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  24136081 cccaaggtgattacaatgtttttcccaacccaagagacact 24136121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31180321 - 31180388
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacc 87  Q
    |||||||||||||| || |||||||||||  |||||||||||| ||| |||||||||||| ||||||||    
T  31180321 tcaagctttacacaaga-caaaccctagattctaccctttggtgtttccccactctcacaatatgaacc 31180388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 457 - 613
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  457 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 556  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  557 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 1055002 - 1054846
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1055002 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 1054903  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  1054902 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 1054846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 25445079 - 25444923
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25445079 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattaca 25444980  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  25444979 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 25444923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 39445594 - 39445750
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445594 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 39445693  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  39445694 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 39445750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 25439882 - 25439730
Alignment:
Q  13 tagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25439882 tagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgt 25439783  T
Q  113 ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  25439782 ttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 25439730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 44023864 - 44023708
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44023864 actctagcttgtcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 44023765  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  44023764 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 44023708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 43988451 - 43988293
Alignment:
Q  11 tctagcttatcaagctttacacatga--acaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    ||||||||||||||||||||||| ||  | |||||||||| ||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  43988451 tctagcttatcaagctttacacaagacaaaaaaccctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattaca 43988352  T
Q  109 atgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  43988351 atgttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 43988293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 41390686 - 41390811
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41390686 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttcc 41390785  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  41390786 caacccaagagacactctcaacaaag 41390811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 41398341 - 41398466
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41398341 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttcc 41398440  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  41398441 caacccaagagacactctcaacaaag 41398466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 24202634 - 24202593
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  24202634 cccaaggtgattacaatgtttttcccaacccaagagacactc 24202593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 24787226 - 24787176
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    ||||||||||||| |||||||||||||||| |||| |||||| || |||||    
T  24787226 cccaaggtgattataatgtttttcccaacccaagagacactctcaacaaag 24787176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 24787354 - 24787285
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||| ||||||| ||||||| ||||||  |||||||||||| ||| || ||||||||| |||||||||    
T  24787354 tcaagcattacacaagaacaaatcctagattctaccctttggtgtttcccaactctcacaatatgaaccc 24787285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 8e-72; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 39784813 - 39784657
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39784813 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 39784714  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||    
T  39784713 atgtttttcccaacctaagagactctctcatcaaaggcacacaccccataggatccc 39784657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 35745489 - 35745645
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35745489 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 35745588  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  35745589 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 35745645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 10684251 - 10684095
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  10684251 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 10684152  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  10684151 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 10684095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 25328258 - 25328112
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| |||||||||||||||||||||||||    
T  25328258 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaacatgaaccctaaaacccaaggtgattacaatgtttttcc 25328159  T
Q  119 caacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||| |||| |||||| ||||||||  ||||| |||||||||||||    
T  25328158 caacccaagagacactctcatcaaagacacacaacccataggatccc 25328112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 7289905 - 7289780
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  7289905 tcaagctttacacatgaacaaaccctatattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgtttttcc 7289806  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  7289805 caacccaagagacactctcaacaaag 7289780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 25328070 - 25327986
Alignment:
Q  81 atgaacccaaaatcccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||  ||||| |||||||||||||    
T  25328070 atgaaccctaaaacccaaggtgattacaatgtttttcccaacccaagagacactctcatcaaagacacacaacccataggatccc 25327986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 18870544 - 18870482
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||||||||||| |||||||||    
T  18870544 ttacacaagaacaaaccctagattctaccctttggtatttccccactctcacaatatgaaccc 18870482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 6311533 - 6311583
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  6311533 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 6311583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 18853150 - 18853088
Alignment:
Q  27 ttacacatgaacaaaccctagagct-accctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||||||| |||||||||    
T  18853150 ttacacaagaacaaaccctagattttaccctttggtatttccccactctcacaatatgaaccc 18853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 18870423 - 18870373
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  18870423 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 18870373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 30655760 - 30655822
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  30655760 ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 30655822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 30655881 - 30655931
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  30655881 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 30655931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 36979491 - 36979553
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  36979491 ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 36979553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 10689002 - 10688961
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  10689002 cccaaggtgattacaatgtttttcccaacccaagagacactc 10688961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 33037670 - 33037629
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  33037670 cccaaggtgattacaatgtttttcccaacccaagagacactc 33037629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 1261819 - 1261785
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaaga 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  1261819 cccaaggtgattacaatgtttttcccaacccaaga 1261785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 18853029 - 18852979
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    ||||||||||||||||| |||||||||||| |||| |||||| || |||||    
T  18853029 cccaaggtgattacaatatttttcccaacccaagagacactctcaacaaag 18852979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 6311404 - 6311472
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||||| || |||||||||||  |||||||||||| ||| ||||||||||||  ||||||||    
T  6311404 tcaagctttacacaaga-caaaccctagattctaccctttggtgtttccccactctcacaagatgaaccc 6311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 36979612 - 36979652
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  36979612 cccaaggtgattacaatg-ttttcccaacctaagagacactc 36979652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 8e-72; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 6438595 - 6438751
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438595 actctagcttgtcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 6438694  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  6438695 atgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 6438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 28155549 - 28155404
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttccc 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28155549 tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgtttttccc 28155450  T
Q  120 aacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  28155449 aacctaagaaacactctcatcaaaggcacacaccccataggatccc 28155404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 6005515 - 6005671
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  6005515 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 6005614  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  6005615 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 6005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 33330432 - 33330276
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  33330432 tctagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaat 33330333  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33330332 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 33330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 33335929 - 33335773
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  33335929 tctagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaat 33335830  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33335829 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 33335773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 16838842 - 16838998
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  16838842 tctagctattcaagctttacacatgaacaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaat 16838941  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  16838942 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 16838998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14737556 - 14737431
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  14737556 tcaagctttacatatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttcc 14737457  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  14737456 caacccaagagacactctcaacaaag 14737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14742416 - 14742291
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  14742416 tcaagctttacatatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaagtgattacaatgtttttcc 14742317  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  14742316 caacccaagagacactctcaacaaag 14742291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 11857080 - 11857205
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  11857080 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgtttttcc 11857179  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  11857180 caacccaagagacactctcaacaaag 11857205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 22010676 - 22010551
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  22010676 tcaagctttacacatgaacaaaccctagattctaccctttgatatttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgtttttcc 22010577  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  22010576 caacccaagagacactctcaacaaag 22010551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 28184610 - 28184707
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgttttt 116  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  28184610 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattactatgttttt 28184707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 5343628 - 5343731
Alignment:
Q  64 tttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccatagga 161  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||  ||||| |||||||||||||||||||| ||||    
T  5343628 tttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacctaagattcactctcatcaaaggaacacaccccaaagga 5343727  T
Q  162 tccc 165  Q
    ||||    
T  5343728 tccc 5343731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 5674632 - 5674591
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  5674632 cccaaggtgattacaatgtttttcccaacccaagagacactc 5674591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 4e-67; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 18855821 - 18855977
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18855821 actctagcttatcaagctttacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccacaatcccaaggtgattaca 18855920  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||| ||| ||||||||| | |||||||||||| ||||    
T  18855921 atgtttttcccaacctaagaaactctctcatcaaaggcaaacaccccataggctccc 18855977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 3814119 - 3814274
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  3814119 actctagctt-tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattaca 3814217  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  3814218 atgtttttcccaacctaagaaacactctcatcaaagacacacaccccataggatccc 3814274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 5732760 - 5732915
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattaca 108  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  5732760 actctagctt-tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactataaacccttaatcccaaggtgattaca 5732858  T
Q  109 atgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  5732859 atgtttttcccaacctaagaaacactctcatcaaaggcacacaccccataggatccc 5732915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 45357286 - 45357130
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattac 107  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  45357286 actctagctt-tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaccccaaggtgattac 45357188  T
Q  108 aatgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  45357187 aatgtttttcccaacctaagaaactctctcatcaaaggcacacaccccataggatccc 45357130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 45347796 - 45347650
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  45347796 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaccccaaggtgattacaatgtttttcc 45347697  T
Q  119 caacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||    
T  45347696 caacctaagagacactctcatcaaaggcacacaccccataggatccc 45347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 9224386 - 9224261
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  9224386 tcaagctttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgttttccc 9224287  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
     |||| |||| |||||| || |||||    
T  9224286 aaacccaagagacactctcaacaaag 9224261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 9229173 - 9229048
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  9229173 tcaagctttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgttttccc 9229074  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
     |||| |||| |||||| || |||||    
T  9229073 aaacccaagagacactctcaacaaag 9229048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 51520563 - 51520688
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  51520563 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgtttttcc 51520662  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  51520663 caacccaagagacactctcaacaaag 51520688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 24742054 - 24742116
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  24742054 ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 24742116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 24742175 - 24742216
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  24742175 cccaaggtgattacaatgtttttcccaacccaagagacactc 24742216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 18712670 - 18712620
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    ||||||||||| |||||||||||||||||| |||| |||||| || |||||    
T  18712670 cccaaggtgataacaatgtttttcccaacccaagagacactctcaacaaag 18712620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 29760780 - 29760818
Alignment:
Q  50 ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  29760780 ctaccctttggtgtttccccactctcacactatgaaccc 29760818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 7e-63; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 18656540 - 18656685
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttccc 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  18656540 tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactataaacccttaatcccaaggtgattacaatgtttttccc 18656639  T
Q  120 aacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  18656640 aacctaagaaacactctcatcaaaggcacacaccccataggatccc 18656685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 2677074 - 2676918
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  2677074 tctagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaat 2676975  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2676974 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 2676918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 2672918 - 2672762
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||    
T  2672918 tctagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccttaaatcccaaggtgattacaat 2672819  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2672818 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 2672762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 8512315 - 8512471
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  8512315 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 8512414  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  8512415 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 8512471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 8517195 - 8517351
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  8517195 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 8517294  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  8517295 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 8517351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 24968205 - 24968361
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    |||||||  ||||||||||||||||||||||||| ||| ||||||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||    
T  24968205 tctagctattcaagctttacacatgaacaaacccgagatctaccctttggtactttcccatcctcacactatgaaccctaaatcccaaggtgattacaat 24968304  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  24968305 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 24968361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 32475581 - 32475738
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtat-tttcccactctcacactatgaacccaaaatcccaaggtgattacaa 109  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||||| ||  |||||||  ||||||||||||||||| ||||||||| |||||||||    
T  32475581 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaa 32475680  T
Q  110 tgtt--tttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||  |||||||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  32475681 tgttgttttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatccc 32475738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 32480439 - 32480596
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtat-tttcccactctcacactatgaacccaaaatcccaaggtgattacaa 109  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||||| ||  |||||||  ||||||||||||||||| ||||||||| |||||||||    
T  32480439 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaa 32480538  T
Q  110 tgtt--tttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||||  |||||||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  32480539 tgttgttttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatccc 32480596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 22173174 - 22173049
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||  | ||||||||| ||| |||||||||||||||||||||||||    
T  22173174 tcaagctttacacatgaacaaaccctagattctaccctttggtgtttccccactctcctaatatgaaccctaaaacccaaggtgattacaatgtttttcc 22173075  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    ||||| |||| |||||| || |||||    
T  22173074 caacccaagagacactctcaacaaag 22173049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 7167358 - 7167420
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||||||||||| |||||||||    
T  7167358 ttacacaagaacaaaccctagattctaccctttggtatttccccactctcacaatatgaaccc 7167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 28501687 - 28501618
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||||| ||| ||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  28501687 tcaagctttacacaagaataaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 28501618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 28503854 - 28503785
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    |||||||||||||| ||| ||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  28503854 tcaagctttacacaagaataaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 28503785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 28501559 - 28501509
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  28501559 cccaaggtgattacaatgtttttcccaacccaagagacactctcaacaaag 28501509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 2671448 - 2671407
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  2671448 cccaaggtgattacaatgtttttcccaacccaagagacactc 2671407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 8477599 - 8477640
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  8477599 cccaaggtgattacaatgtttttcccaacccaagagacactc 8477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 40372658 - 40372617
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  40372658 cccaaggtgattacaatgtttttcccaacccaagagacactc 40372617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 8738925 - 8738891
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaaga 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  8738925 cccaaggtgattacaatgtttttcccaacccaaga 8738891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 9091163 - 9091129
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaaga 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  9091163 cccaaggtgattacaatgtttttcccaacccaaga 9091129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 28503726 - 28503676
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactcacatcaaag 144  Q
    ||||||||||||||||| |||||||||||| |||| |||||| || |||||    
T  28503726 cccaaggtgattacaatatttttcccaacccaagagacactctcaacaaag 28503676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 7167479 - 7167530
Alignment:
Q  94 cccaaggtgattacaatg-tttttcccaacctaagaaacactcacatcaaag 144  Q
    |||||||||||||||||| |||||||||||| |||| |||||| || |||||    
T  7167479 cccaaggtgattacaatgttttttcccaacccaagagacactctcaacaaag 7167530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 19344519 - 19344676
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaa- 109  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  19344519 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 19344618  T
Q  110 --tgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
      |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  19344619 gttgtttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 19344676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 19349377 - 19349534
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaa- 109  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  19349377 tctagcttttcaagctttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaat 19349476  T
Q  110 --tgtttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
      |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  19349477 gttgtttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 19349534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 32246883 - 32247035
Alignment:
Q  9 actctagcttatcaagctttacacatgaacaaaccctagagc-taccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattac 107  Q
    |||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32246883 actctagctt-tcaagctttacacatgaacaaaccctagattataccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattac 32246981  T
Q  108 aatgtttttcccaacctaagaaacactcacatcaaaggaacacaccccatagga 161  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  32246982 aatgtttttcccaacctaagaaacactctcatcaaaggcacacaccccatagga 32247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 39811968 - 39811843
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||     
T  39811968 tcaagctttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttct 39811869  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
    |||||||||| |||||| || |||||    
T  39811868 caacctaagagacactctcaacaaag 39811843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 11098910 - 11098848
Alignment:
Q  27 ttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaaccc 88  Q
    ||||||| ||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||    
T  11098910 ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccc 11098848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 11098789 - 11098748
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacactc 135  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  11098789 cccaaggtgattacaatgtttttcccaacccaagagacactc 11098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 14291723 - 14291763
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaagaaacact 134  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  14291723 cccaaggtgattacaatgtttttcccaacccaagagacact 14291763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 9296264 - 9296235
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacc 123  Q
    ||||||||||||||||||||||||||||||    
T  9296264 cccaaggtgattacaatgtttttcccaacc 9296235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 44312603 - 44312575
Alignment:
Q  20 tcaagctttacacatgaacaaaccctaga 48  Q
    |||||||||||||||||||||||||||||    
T  44312603 tcaagctttacacatgaacaaaccctaga 44312575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 102; Significance: 6e-51; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 14296 - 14140
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  14296 tctagcttatcaagctttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 14197  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  14196 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 19152 - 18996
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||| ||||||||||||||||    
T  19152 tctagcttatcaagctttacacaagacaaaaccctagatctaccctttggtaatttcccaacctcacactatgaacccataattccaaggtgattacaat 19053  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  19052 gttgttttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccc 18996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 98; Significance: 1e-48; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 2238 - 2082
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  ||||| |||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  2238 tctagcttatcaagctttacacaagacaaaaccatagatctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 2139  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  2138 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 2082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 98; Significance: 1e-48; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 148943 - 148787
Alignment:
Q  11 tctagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaat 110  Q
    ||||||||||||||||||||||| ||  ||||| |||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||    
T  148943 tctagcttatcaagctttacacaagacaaaaccatagatctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaat 148844  T
Q  111 gt--ttttcccaacctaagaaacactcacatcaaaggaacacaccccataggatccc 165  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  148843 gttgttttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatccc 148787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 97; Significance: 6e-48; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 3827 - 3703
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttccc 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||     
T  3827 tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttcct 3728  T
Q  120 aacctaagaaacactcacatcaaag 144  Q
    ||||||||| |||||| || |||||    
T  3727 aacctaagagacactctcaacaaag 3703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 9622 - 9514
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttccc 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  9622 tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtttttccc 9523  T
Q  120 aacctaaga 128  Q
    |||||||||    
T  9522 aacctaaga 9514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 176936 - 176808
Alignment:
Q  39 aaaccctagagctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaacctaagaaacactca 136  Q
    |||||||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||     
T  176936 aaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacctaagatacactct 176837  T
Q  137 catcaaaggaacacaccccataggatccc 165  Q
    |||||||||||||||||||| ||||||||    
T  176836 catcaaaggaacacaccccaaaggatccc 176808  T

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Target: scaffold0135 (Bit Score: 74; Significance: 3e-34; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 35041 - 34916
Alignment:
Q  20 tcaagctttacacatgaacaaaccctagag-ctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtttttcc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  35041 tcaagctttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgttttccc 34942  T
Q  119 caacctaagaaacactcacatcaaag 144  Q
     |||| |||| |||||| || |||||    
T  34941 aaacccaagagacactctcaacaaag 34916  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 17817 - 17783
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaaga 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  17817 cccaaggtgattacaatgtttttcccaacccaaga 17783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 23910 - 23876
Alignment:
Q  94 cccaaggtgattacaatgtttttcccaacctaaga 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  23910 cccaaggtgattacaatgtttttcccaacccaaga 23876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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