View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-3 (Length: 1061)

Name: NF0054-Insertion-3
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-3
NF0054-Insertion-3
[»] chr5 (6 HSPs)
chr5 (301-642)||(27314130-27314471)
chr5 (9-229)||(27313851-27314058)
chr5 (736-986)||(27314805-27315045)
chr5 (661-738)||(27314760-27314835)
chr5 (756-804)||(9511927-9511975)
chr5 (756-814)||(11335326-11335384)
[»] chr7 (3 HSPs)
chr7 (26-95)||(11827948-11828017)
chr7 (149-191)||(46964313-46964355)
chr7 (122-167)||(21812626-21812671)
[»] chr8 (1 HSPs)
chr8 (26-112)||(43516134-43516218)
[»] chr1 (4 HSPs)
chr1 (757-838)||(3775076-3775155)
chr1 (794-874)||(3774978-3775058)
chr1 (26-96)||(30435617-30435687)
chr1 (122-163)||(9253288-9253329)
[»] chr6 (4 HSPs)
chr6 (65-112)||(28064681-28064728)
chr6 (151-192)||(10740746-10740787)
chr6 (147-193)||(18792736-18792782)
chr6 (147-189)||(21858213-21858255)
[»] chr3 (4 HSPs)
chr3 (122-189)||(2593010-2593076)
chr3 (756-814)||(42530811-42530869)
chr3 (150-193)||(29554669-29554712)
chr3 (666-703)||(42530816-42530853)
[»] chr4 (4 HSPs)
chr4 (758-810)||(24225694-24225746)
chr4 (149-192)||(24131938-24131981)
chr4 (149-191)||(16869684-16869726)
chr4 (759-845)||(24225661-24225749)
[»] chr2 (3 HSPs)
chr2 (756-815)||(38583929-38583987)
chr2 (149-191)||(8985748-8985790)
chr2 (826-867)||(2484620-2484661)
[»] scaffold0511 (1 HSPs)
scaffold0511 (147-193)||(11359-11405)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 301 - 642
Target Start/End: Original strand, 27314130 - 27314471
Alignment:
Q  301 cgtactgttcaaacccctcgctgaattgttttatctcgccgaagtttgctagttgtctggttgtattccataggttgatgccgttgattttttgttgatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27314130 cgtactgttcaaacccctcgctgaattgttttatctcgccgaagtttgctagttgcctggttgtattccataggttgatgccgttgattttttgttgatg 27314229  T
Q  401 cactttgaaggtaaaaccagagggttgttgtctctatgttttttgttttggtctaagtcaaaattgaaaggaagcttgcaatgttccacacaaaatttgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27314230 cactttgaaggtaaaaccagagggttgttgtctctatgttttttgttttggtctaagtcaaaattgaaaggaagcttgcaatgttccacacaaaatttgc 27314329  T
Q  501 agtgttatttatggggtttgattgaaatttgtctttctctgtcctattgttttggattagtttgattcaatttagtttgcaatgactcttttggtttgta 600  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314330 agtgttatttatggggtttgattgaaatttgtccttctctgtcctattgttttggattagtttgattcaatttagtttgcaatgactcttttggtttgta 27314429  T
Q  601 tttgtgagtggcttaagtattccttctatccactcatttgta 642  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  27314430 tttgtgagtggcttaagtattccttctatccactaatttgta 27314471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 27313851 - 27314058
Alignment:
Q  9 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           
T  27313851 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatattct------- 27313943  T
Q  109 ccttctctagtaatctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctccttgaacattttgcatcttttc 208  Q
          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27313944 ------ctagtaatctttgttattctctattgaaactatatattgttaacatggtatcaagagctttgttcgatcctccttgaacattttgcatcttttc 27314037  T
Q  209 cgctgttgttttcccaaaacc 229  Q
    |||||||||||||||||||||    
T  27314038 cgctgttgttttcccaaaacc 27314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 736 - 986
Target Start/End: Original strand, 27314805 - 27315045
Alignment:
Q  736 attattgattatacttccctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccatttgattctt 835  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27314805 attattgattatacttctctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccttttgattctt 27314904  T
Q  836 ctgtttggttgcacctctctctattggttcttattatttatggtcgcttctccctaccggctcatttgtttggattgatttgatgacttgattcttctgt 935  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||||||||||| ||||| ||   ||||||| ||      |    
T  27314905 ctgtttggttgcacctctctctattggttc---ttatttatggtcgcttctccctactagctcatttgtttagattggtt---tgacttggtt------t 27314992  T
Q  936 tggatg-attctctctttgtatggtgatgg-tttggctgcactctctatgata 986  Q
    | |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  27314993 ttgatgaattctctctttgtatggtgatggttttggctgcactctctatgata 27315045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 661 - 738
Target Start/End: Original strand, 27314760 - 27314835
Alignment:
Q  661 tcatattgattattctgattgattgcacttcttcccattttgactattattgatttaatacttctcccccttttgatt 738  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  27314760 tcatattgattattctgattgattgcatttcttcccattttgactattattgatt--atacttctctcccttttgatt 27314835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 756 - 804
Target Start/End: Original strand, 9511927 - 9511975
Alignment:
Q  756 cccttttgatttttgtgattgattgcacttctccccattttgattcttc 804  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  9511927 cccttttgattcttctgattgattgcacttctccccatattgattcttc 9511975  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 756 - 814
Target Start/End: Complemental strand, 11335384 - 11335326
Alignment:
Q  756 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg 814  Q
    ||||||||||| || ||||||||| ||||||||||| | |||||||||| | |||||||    
T  11335384 cccttttgattcttttgattgattacacttctccccctattgattcttctgattgattg 11335326  T

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Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
Q  26 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatata 95  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||    
T  11828017 tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata 11827948  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 46964355 - 46964313
Alignment:
Q  149 tattgttaacatggtatcaagagctttgtttgatcctccttga 191  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  46964355 tattgttaacatggtatcaagagcgtggtttgaccctccttga 46964313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 21812626 - 21812671
Alignment:
Q  122 tctttgttattctctattgaaaccatatattgttaacatggtatca 167  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||    
T  21812626 tctttgttattctcttttgaaatattatattgttaacatggtatca 21812671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 43516134 - 43516218
Alignment:
Q  26 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaacctt 112  Q
    |||| ||||||||| |||||||||||||||  |  ||| ||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  43516134 tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttt--tatatatattctctagtaacctt 43516218  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 757 - 838
Target Start/End: Complemental strand, 3775155 - 3775076
Alignment:
Q  757 ccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccatttgattcttctg 838  Q
    |||||||||| || |||||||||||  ||||||||||||||||||||| | | |||||||||| || | |||||||||||||    
T  3775155 ccttttgattcttttgattgattgc--ttctccccattttgattcttctgatcgattgtttctctctcttttgattcttctg 3775076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 794 - 874
Target Start/End: Complemental strand, 3775058 - 3774978
Alignment:
Q  794 tttgattcttcggtttgattgtttctgtcccatttgattcttctgtttggttgcacctctctctattggttcttattattt 874  Q
    ||||||||||| ||||| ||| | || || | ||||||||| |||||||||||| || |||||||||| ||||||| ||||    
T  3775058 tttgattcttctgtttggttgctcctctctcttttgattctcctgtttggttgctccactctctattgattcttatgattt 3774978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 30435617 - 30435687
Alignment:
Q  26 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat 96  Q
    |||| ||||||||||||||| |||||||||  | |||| |  |||||||||  ||||||||||||||||||    
T  30435617 tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatatatat 30435687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 9253329 - 9253288
Alignment:
Q  122 tctttgttattctctattgaaaccatatattgttaacatggt 163  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  9253329 tctttgttattctctattgaaaccttgttttgttaacatggt 9253288  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 28064728 - 28064681
Alignment:
Q  65 ttagtttagagtctattaggttttatatatatattctctggtaacctt 112  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  28064728 ttagtttagagtccattaggttttatatttatattctctagtaacctt 28064681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 10740746 - 10740787
Alignment:
Q  151 ttgttaacatggtatcaagagctttgtttgatcctccttgaa 192  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaa 10740787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 18792782 - 18792736
Alignment:
Q  147 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 193  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  18792782 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 18792736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 21858213 - 21858255
Alignment:
Q  147 tatattgttaacatggtatcaagagctttgtttgatcctcctt 189  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  21858213 tatatagttaacatggtatcaagagcttgatttgatcctcctt 21858255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 2593076 - 2593010
Alignment:
Q  122 tctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctcctt 189  Q
    |||||||||||||||||||||||| || |||||||||||| |||  |||||||  |||||||||||||    
T  2593076 tctttgttattctctattgaaaccctagattgttaacatgatat-tagagcttgttttgatcctcctt 2593010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 814
Target Start/End: Original strand, 42530811 - 42530869
Alignment:
Q  756 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg 814  Q
    ||||||||||| || ||||||||||||||||| ||| |||||||||||| | |||||||    
T  42530811 cccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgattg 42530869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 29554669 - 29554712
Alignment:
Q  150 attgttaacatggtatcaagagctttgtttgatcctccttgaac 193  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29554669 attgttaacatggtatcaaaagctttgttcgatccaccttgaac 29554712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 666 - 703
Target Start/End: Original strand, 42530816 - 42530853
Alignment:
Q  666 ttgattattctgattgattgcacttcttcccattttga 703  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  42530816 ttgattcttctgattgattgcacttcttccccttttga 42530853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 758 - 810
Target Start/End: Original strand, 24225694 - 24225746
Alignment:
Q  758 cttttgatttttgtgattgattgcacttctccccattttgattcttcggtttg 810  Q
    ||||||||| || |||||||||||| |||||||| |||||||||||| |||||    
T  24225694 cttttgattcttctgattgattgcatttctcccccttttgattcttctgtttg 24225746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 24131938 - 24131981
Alignment:
Q  149 tattgttaacatggtatcaagagctttgtttgatcctccttgaa 192  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  24131938 tattgttaacatggtatcaagagcttgttttgatccaccttgaa 24131981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 16869684 - 16869726
Alignment:
Q  149 tattgttaacatggtatcaagagctttgtttgatcctccttga 191  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  16869684 tattgttaacatggtatcaagagcgtggtttgaccctccttga 16869726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 759 - 845
Target Start/End: Original strand, 24225661 - 24225749
Alignment:
Q  759 ttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg--tttctgtcccatttgattcttctgtttggtt 845  Q
    |||||||| || ||||| ||||||||| | ||  |||||||||||| | |||||||  |||||  ||| ||||||||||||||||||||    
T  24225661 ttttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctcccccttttgattcttctgtttggtt 24225749  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 815
Target Start/End: Complemental strand, 38583987 - 38583929
Alignment:
Q  756 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgt 815  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||||| | ||||||||    
T  38583987 cccttttgattcttctgattgattgcacttctcccc-ctttgattcttctgattgattgt 38583929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 8985748 - 8985790
Alignment:
Q  149 tattgttaacatggtatcaagagctttgtttgatcctccttga 191  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  8985748 tattgttaacatggtatcaagagcgtggtttgaccctccttga 8985790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 826 - 867
Target Start/End: Original strand, 2484620 - 2484661
Alignment:
Q  826 tttgattcttctgtttggttgcacctctctctattggttctt 867  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    
T  2484620 tttgattcttctatttggttgctcctctttctattggttctt 2484661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 11359 - 11405
Alignment:
Q  147 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 193  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  11359 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 11405  T

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