View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054-Insertion-4 (Length: 1050)
Name: NF0054-Insertion-4
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 9 - 852
Target Start/End: Complemental strand, 43665807 - 43664967
Alignment:
| Q |
9 |
tctggatcctcgacgtcgctaacaacatgcttcaaggtccttgccgtgcacttcttggtgacctctgcgccggtaaccaccaaaaaacaagaaacgcaaa |
108 |
Q |
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| T |
43665807 |
tctggatcctcgacgtcgctaacaacatgcttcaaggtccttgccgtgcacttcttggtgacctctgcgccggtaaccaccaaaaaacaagaaacgcaaa |
43665708 |
T |
|
| Q |
109 |
cgcgtttttctcgttttttatggccgtcggtaacatcctcggttacgccgccggtgcttacagcaaactctttcacgtgtttccattcaccaaaacaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43665707 |
cgcgtttttctcgttttttatggccgtcggtaacatcctcggttacgccgccggtgcttacagcaaactctttcacgtgtttccgttcaccaaaacaaaa |
43665608 |
T |
|
| Q |
209 |
gcatgtgatatctactgtgcaaatttgaaaagctgtttcttcctctcaatcgcacttttaaccgccgtagcaaccgccgcactgatctacgtgaaagaaa |
308 |
Q |
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| T |
43665607 |
gcatgtgatatctactgtgcaaatttgaaaagctgtttcttcctctcaatcgcacttttaaccgccgtagcaaccgccgcactgatctacgtgaaagaaa |
43665508 |
T |
|
| Q |
309 |
taccactctcgccggaaaaagtcaccggtaacggtgtaaccgacgaagacggtaacgttacaaagagtagtaacccatgtttcggggaattatccggagc |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43665507 |
taccactctcgccggaaaaagtcaccggtaacggtgtaaccgacgaagacggtaacgttacaaagagtagtaacccatgtttcggggaattatccggtgc |
43665408 |
T |
|
| Q |
409 |
ttttcgcgaactaaagcgtcccatgtggatcttactattggtgacgtgtctcaactggattgcgtggtttcctttcttactattcgatactgattggatg |
508 |
Q |
| |
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| T |
43665407 |
ttttcgcgaactaaagcgtcccatgtggatcttactattggtgacgtgtctcaactggattgcgtggtttcctttcttactattcgatactgattggatg |
43665308 |
T |
|
| Q |
509 |
gggaaagaggtttatggaggaacggttggggaaggtcatgcgtatgataaaggtgtgcgcgcgggtgcattgggtcttatgctaaactctgtcgttttag |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43665307 |
gggaaagaggtttatggaggaacggttggggaaggtcatgcgtatgataaaggtgtgcgcgcgggtgcattgggtcttatgctaaactctgtcgttttgg |
43665208 |
T |
|
| Q |
609 |
gtgccacgtcactaggagttgatgtgttggcgcgtggtgttggtggtgtgaagaggttatggggtattgttaacttcctgcttgcaatttgtttggctat |
708 |
Q |
| |
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| T |
43665207 |
gtgccacgtcactaggagttgatgtgttggcgcgtggtgttggtggtgtgaagaggttatggggtattgttaacttcctgcttgcaatttgtttggctat |
43665108 |
T |
|
| Q |
709 |
gactgttttggttactaaattgggctcagcattcgcgagtaatacgcggatgctagccatactgatcctcttccactttccggtggtattaccgctggcg |
808 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| || || || || | |
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| T |
43665107 |
gactgttttggttactaaatt-ggctcagcattcgcgagt-atacgcggatgctagccataccgatcctcttccaccttccggtggcatcactgccggtg |
43665010 |
T |
|
| Q |
809 |
cgttggcttctctttttcgtcctcggaattcctcttgcggtaat |
852 |
Q |
| |
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||||||| |||||||| ||| |||||||||||||| |||||||| |
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|
| T |
43665009 |
cgttggc-tctcttttccgttctcggaattcctctcgcggtaat |
43664967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 55076704 - 55076786
Alignment:
| Q |
128 |
atggccgtcggtaacatcctcggttacgccgccggtgcttacagcaaactctttcacgtgtttccattcaccaaaacaaaagc |
210 |
Q |
| |
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|||||||| || || ||||| ||||| |||||||| ||| ||||||||||| |||| ||||||| |||||| |||| ||||| |
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| T |
55076704 |
atggccgtgggaaatatccttggttatgccgccggctctttcagcaaactctatcacatgtttcctttcacccaaactaaagc |
55076786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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