View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0054-Insertion-5 (Length: 1026)

Name: NF0054-Insertion-5
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0054-Insertion-5
NF0054-Insertion-5
[»] chr1 (2 HSPs)
chr1 (9-526)||(2785330-2785847)
chr1 (654-1007)||(2784835-2785193)
[»] chr5 (13 HSPs)
chr5 (654-841)||(22526021-22526214)
chr5 (334-408)||(22524063-22524137)
chr5 (411-494)||(22525506-22525589)
chr5 (36-116)||(22520577-22520657)
chr5 (334-408)||(22534324-22534398)
chr5 (257-326)||(22523895-22523964)
chr5 (411-494)||(22531379-22531462)
chr5 (411-491)||(22534687-22534770)
chr5 (268-326)||(22530795-22530853)
chr5 (191-228)||(22521982-22522019)
chr5 (711-785)||(22535034-22535108)
chr5 (334-407)||(22530963-22531036)
chr5 (282-323)||(22534167-22534208)
[»] chr7 (2 HSPs)
chr7 (654-782)||(29438070-29438198)
chr7 (412-494)||(29438615-29438697)


Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 9 - 526
Target Start/End: Complemental strand, 2785847 - 2785330
Alignment:
Q  9 gttagcatgggacaacaggttcccaggatgattcctactccaggaatgcctcaacaagtacagtcaggcatgcagccgcttgtgaataacgcagctgcta 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2785847 gttagcatgggacaacaggttcccagaatgattcctactccaggaatgcctcaacaagtacagtcaggcatgcagccacttgtgaataacgcagctgcta 2785748  T
Q  109 ctaatatgcccttatcacaacaggcaacttctgcacagccgcccaaatatattaaggcctgggagggaaccttgacaggtttaagacaaggacagccggt 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785747 ctaatatgcccttatcacaacagacaacttctgcacagccgcccaaatatattaaggcctgggagggaaccttgacaggtttaagacaaggacagccggt 2785648  T
Q  209 atttatcagcaaactcgaaggttataggagtttttctgcatccgagacacttacagcggactggcctgctggtatgcaaataggtcggcttatatctcag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785647 atttatcagcaaactcgaaggttataggagtttttctgcatccgagacacttacagcggactggcctgctggtatgcaaataggtcggcttatatctcag 2785548  T
Q  309 gatcacatgaataacaagcagtatataggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785547 gatcacatgaataacaagcagtatataggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 2785448  T
Q  409 aatgtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagacaaaccttaccgcttgattgggatgatttttcctaaggagatggttgt 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2785447 aatgtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagacaaaccttgccgcttgatcgggatgatttttcctaaggagatggttgt 2785348  T
Q  509 aactaagccaccattgtc 526  Q
    ||||||||||||||||||    
T  2785347 aactaagccaccattgtc 2785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 654 - 1007
Target Start/End: Complemental strand, 2785193 - 2784835
Alignment:
Q  654 atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785193 atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg 2785094  T
Q  754 gtcgaggaaatttcatgagttaggtcattctctgatacaggttccccaagattgacacaaaagtcatgttttggggataccatttattataatatttcaa 853  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785093 gtcgaggaaatttcatgagttaggtcattctctgatacaggttccacaagattgacacaaaagtcatgttttggggataccatttattataatatttcaa 2784994  T
Q  854 cagttttatgggtttttcaccttacattacataccttgctatttgt--atggacaattgttattgtg-ttgtgctggtgatggaaaattctcactatgtt 950  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  2784993 cagttttat-ggtttttcaccttacattacataccttgctatttgttattggacaattgttatcgtgtttgtgctggtgatggaaaattctcactatgtt 2784895  T
Q  951 tga--tatcc-aatct-catgcataagaaaaactgcagaaaatgactgtg-tagcagtggca 1007  Q
    |||  ||||| ||||| ||||||||   ||||||||||||||||| |||| |||||||||||    
T  2784894 tgaattatccaaatctccatgcata--gaaaactgcagaaaatgattgtgttagcagtggca 2784835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 7e-55; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 654 - 841
Target Start/End: Original strand, 22526021 - 22526214
Alignment:
Q  654 atggttggtgctggaaggggtcaaaactatgttcaagatcctggg---cgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaaca 750  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||   ||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  22526021 atggttggtgctggaatgggtcaaacctatgttcaaggtcctggggggcgctcacaaatggtttctcagggacaagtttcatcacagggagctacaaaca 22526120  T
Q  751 gtggtcgaggaaatttcatgagttaggtcattctctgatacaggttccccaagattgacacaa---aagtcatgttttggggataccatttatt 841  Q
     |||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||    ||||||||||||||||| | |||||||    
T  22526121 ttggtggagggaatttcatgagttagctcattctctgatacagcttccccaagattgacacaacaccagtcatgttttggggattctatttatt 22526214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 22524063 - 22524137
Alignment:
Q  334 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 408  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  22524063 taggaaaggcagattttctagtatttcgggcaatgaacccgcatggttttcttggtcagctgcaggaaaagaagc 22524137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 22525506 - 22525589
Alignment:
Q  411 tgtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagacaaaccttaccgcttgattgggatgatttttcct 494  Q
    |||||||||||||||||||||||||||||||||||| | ||||| ||||||||| | | ||||||||| |||||| ||||||||    
T  22525506 tgtgcagttattcaattgccatcacagacgttgctactatctgtgtcagacaaagcctgccgcttgatcgggatgctttttcct 22525589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 22520577 - 22520657
Alignment:
Q  36 atgattcctactccaggaatgcctcaacaagtacagtcaggcatgcagccgcttgtgaataacgcagctgctactaatatg 116  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  22520577 atgattcctactccaggaatacctcaacaggtacaatcaggtatgcaacctcttgtgaataatgcagctgctgctaatatg 22520657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 22534324 - 22534398
Alignment:
Q  334 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 408  Q
    ||||||| |||||||||||||||||||||||||||||||  || |||||||||||||||||| | ||||| ||||    
T  22534324 taggaaacgcagatttcctagtttttcgggcaatgaacccacatggttttcttggtcagctgcaagaaaaaaagc 22534398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 22523895 - 22523964
Alignment:
Q  257 acttacagcggactggcctgctggtatgcaaataggtcggcttatatctcaggatcacatgaataacaag 326  Q
    |||| ||||| |||||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  22523895 acttgcagcgaactggcctcctgtaatgcaaatagttcggcttatatctcaggatcacatgaataacaag 22523964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 22531379 - 22531462
Alignment:
Q  411 tgtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagacaaaccttaccgcttgattgggatgatttttcct 494  Q
    ||||||||||||||||||| |||||||||||||||| | ||||| ||||||||| | | ||||||||| ||| || ||||||||    
T  22531379 tgtgcagttattcaattgcaatcacagacgttgctactatctgtgtcagacaaagcctgccgcttgatgggggtgctttttcct 22531462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 491
Target Start/End: Original strand, 22534687 - 22534770
Alignment:
Q  411 tgtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagaca-aacct--taccgcttgattgggatgattttt 491  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||| |||| | |||  | |||||||||||||||| |||||    
T  22534687 tgtgcagttattcaattgccatcacagactttgctactatctgtttctgacatagcctgctgccgcttgattgggatgcttttt 22534770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 22530795 - 22530853
Alignment:
Q  268 actggcctgctggtatgcaaataggtcggcttatatctcaggatcacatgaataacaag 326  Q
    |||||||| |||  ||||| |||| |||| |||||||||||||||||||||||||||||    
T  22530795 actggcctcctgaaatgcacatagttcggattatatctcaggatcacatgaataacaag 22530853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 22521982 - 22522019
Alignment:
Q  191 aagacaaggacagccggtatttatcagcaaactcgaag 228  Q
    |||||||||||||||||||||||||| |||||||||||    
T  22521982 aagacaaggacagccggtatttatcaccaaactcgaag 22522019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 711 - 785
Target Start/End: Original strand, 22535034 - 22535108
Alignment:
Q  711 gtttctcagggacaagtttcatcacaaggagctacaaacagtggtcgaggaaatttcatgagttaggtcattctc 785  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||    ||| ||||| ||||||||| ||||||||    
T  22535034 gtttctcaaggacacgtttcatcacaaggtgctacaaacattgaagaagggaatttgatgagttagttcattctc 22535108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 334 - 407
Target Start/End: Original strand, 22530963 - 22531036
Alignment:
Q  334 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaag 407  Q
    ||||| ||||||||||||||||||| |||||||  |||  ||| ||||| |||||||  ||| |||||||||||    
T  22530963 taggagaggcagatttcctagttttccgggcaagaaacacgcatggtttccttggtcttctgcaggaaaagaag 22531036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 22534167 - 22534208
Alignment:
Q  282 atgcaaataggtcggcttatatctcaggatcacatgaataac 323  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  22534167 atgcaaatagttcagcttatacctcaggatcacatgaataac 22534208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 654 - 782
Target Start/End: Complemental strand, 29438198 - 29438070
Alignment:
Q  654 atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg 753  Q
    ||||||||||  |||| |||||||| || |||||||| |||||| | ||||||||  ||||| ||||| ||||||||||||||| |||||||||||| ||    
T  29438198 atggttggtgtcggaatgggtcaaacctgtgttcaaggtcctggacactcacaaatggtttcccagggtcaagtttcatcacaacgagctacaaacattg 29438099  T
Q  754 gtcgaggaaatttcatgagttaggtcatt 782  Q
     | || | ||||||||||||||| |||||    
T  29438098 atggaaggaatttcatgagttagctcatt 29438070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 412 - 494
Target Start/End: Complemental strand, 29438697 - 29438615
Alignment:
Q  412 gtgcagttattcaattgccatcacagacgttgctaatgtctgtttcagacaaaccttaccgcttgattgggatgatttttcct 494  Q
    |||||||||||||||||||||||||||| |||||  | | |||||| || |||||  |||  |||||||||||| || |||||    
T  29438697 gtgcagttattcaattgccatcacagacattgctgctatttgtttctgaaaaacccaaccagttgattgggatgtttattcct 29438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 739 times since January 2019
Visitors: 1284