View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054-Insertion-6 (Length: 1012)
Name: NF0054-Insertion-6
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 302 - 945
Target Start/End: Complemental strand, 52173094 - 52172449
Alignment:
| Q |
302 |
tcattcattttcaatgataaattgtggaactcttatgctagtattgaaatgtcaaatgtgagcaagaagctttatgttgcaatctattttctcctaatac |
401 |
Q |
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| T |
52173094 |
tcattcactttcaatgataaattgtggaactcttatgctagtattgaaatgtcaaatgtgagcaagaagctttatgttgcaatctattttctcctaatac |
52172995 |
T |
|
| Q |
402 |
caaaatgactatgcaatgttgagcaacacattcatgttggttttgatggagaaaacagagaagagtggctgcagactttgaacaatccacaacctatagc |
501 |
Q |
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| T |
52172994 |
caaaatgactatgcaatgttgagcaacgcattcatgttggttttgatggagaaaacagagaagagtggctgcagactttgaacaatccacaacctatagc |
52172895 |
T |
|
| Q |
502 |
agctatggttatactaaatctattgtgtatggagacattgcagtcgccattagattcagagcaactgtagatctagctgtctctcaatacaccatacttc |
601 |
Q |
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| T |
52172894 |
agctatggttatactaaatctattgtgtatggagacattgcagtcgccattagatttagagcaactatagatctagctgtctctcaatacaccatacttc |
52172795 |
T |
|
| Q |
602 |
agtgtaactcctacatttctgtttctgataaaaggtgtattctacatgtgtgcgacgccgacacattacatttgattaattcattttttcaaatacttgt |
701 |
Q |
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| T |
52172794 |
agtgtaactcctacatttctgtttctgataaaaggtgtattctacatgtgtgcgacgccgacacattacatttgattaattcattttttcaaatacttgt |
52172695 |
T |
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| Q |
702 |
tggtgccgatgtgttagacagtcaatgtcgtgcctgactatgcgaatgtgtttcctatatttaacatcaacttcataacttgtggtaatcatatctaact |
801 |
Q |
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| T |
52172694 |
tggtgccgatgtgttagacagtcaatgtcgtgtctgactatgcgaatgtgtttcctatatttaacatcaacttcataacttgtggtaatcatatctaact |
52172595 |
T |
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| Q |
802 |
atttcctcttcagttcaaatctacttctttatctaataaaactaagagagttgtgcagtttctc-aacacgatgaatcgtttcactgatattgttcaagc |
900 |
Q |
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| T |
52172594 |
atttcctcttcagttcaaatctacttctttatctaataaaactaagagagttgtgcagtttctcaaatacgatgaatcgtttcactgatattgttcaagc |
52172495 |
T |
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| Q |
901 |
tgatactcatgtaagagttttttggatgaatttc-aaattaggaaa |
945 |
Q |
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| T |
52172494 |
tgatactcatgtaagagttttttggatgaatttcaaaattaggaaa |
52172449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 52173385 - 52173120
Alignment:
| Q |
9 |
cactatagatcattggagcatgttgatagaaaatttcctgatataatttagaaatattggcatattgttgaatcaggtttagcagaactagctattggag |
108 |
Q |
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| T |
52173385 |
cactatagatcattggagcatgttgatagaaaatttcctgatataatttagaaatattggcatattgttgaatcaggtttagcagaactagctattggag |
52173286 |
T |
|
| Q |
109 |
tgacattgaccgtggcacaaattgttgaaatcagatgcattgaagtttcacgatcttaattaaggccaatatgttttcaaagtattgatctatttgtctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52173285 |
tgacattgaccgtggcacaaattgttgaaatcagatgcattgaagtttcacgatcttaattaaggccaatatgttttcaaagtattgatctatttgactt |
52173186 |
T |
|
| Q |
209 |
ggagacttatatttttcaagacacctttaagcacatttagtatgcaatgaagaagaaacattgatc |
274 |
Q |
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| T |
52173185 |
ggagacttatatttttcaagacacctttaagcacatttagtatgcaatgaagaagaaacattgatc |
52173120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 31609440 - 31609519
Alignment:
| Q |
414 |
gcaatgttgagcaacacattcatgttggttttgatggagaaaacagagaagagtggctgcagactttgaacaatccacaa |
493 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| | |||||||| |||| | |||||| ||||| ||||| ||||| |
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| T |
31609440 |
gcaatgttgaacaacacattcatgttggttttgataggaaaaacagaaaagaaagactgcagcctttggacaatgcacaa |
31609519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 502
Target Start/End: Original strand, 31615735 - 31615822
Alignment:
| Q |
416 |
aatgttgagcaacacattcatgttggttttgatggagaaaacagagaagagtggctgcagactttg-aacaatccacaacctatagca |
502 |
Q |
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| T |
31615735 |
aatgttgaactatacattcatgttgattttgatggggaaaacagagaagaaagactgcggcctttgaaaaaatgcacaacctatagca |
31615822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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