View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0054-Insertion-9 (Length: 928)
Name: NF0054-Insertion-9
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054-Insertion-9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 812; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 9 - 899
Target Start/End: Complemental strand, 41785655 - 41784772
Alignment:
| Q |
9 |
tgtgtttcctcacttgcagttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgt |
108 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785655 |
tgtgtttcctcacttgcatttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgt |
41785556 |
T |
|
| Q |
109 |
tctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatatt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785555 |
tctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatatt |
41785456 |
T |
|
| Q |
209 |
gtcttccattttcttcctcaacttttctgccaattcttccattttcatttcagtcgatcgctgattcaacataagtttattcgaggtgattatggtttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785455 |
gtcttccattttcttcctcaacttttctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgt |
41785356 |
T |
|
| Q |
309 |
ttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttcta |
408 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785355 |
ttttgctccgcatttattcggtcaatggttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttcta |
41785256 |
T |
|
| Q |
409 |
tctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41785255 |
tctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtc |
41785156 |
T |
|
| Q |
509 |
attaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctcttttgtat |
608 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41785155 |
attaacttcagcttttaaagccataatctcaattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctc-tttgtat |
41785057 |
T |
|
| Q |
609 |
cattgctgctttcagttcatggtttctatcctgcagggccttatttttcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaa |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41785056 |
cattgctgctttcagttcatggtttctatcctgcagggcctta-ttttcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaa |
41784958 |
T |
|
| Q |
709 |
ctcatttctctgattgatttgagtttccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagga |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
41784957 |
ctcatttctctgattgatttgagtttccaattcgagttccatgttctttaacctcgcaagaaaaccttctttctcttccatcatagtttgttcagta-ga |
41784859 |
T |
|
| Q |
809 |
tctccaatttcagctaactcctcttgcaactcacttttctggttgctttgtgtttcccaatttgaattccattttcctttaaccgcgcaag |
899 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
41784858 |
tctc--atttcagctaactcctcttgcaactcacttttctggttgctttgtgttt-ccaatttgaattcca-tttcctttaaccgcgcaag |
41784772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 694 - 801
Target Start/End: Complemental strand, 41784846 - 41784739
Alignment:
| Q |
694 |
taactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttccatcata |
793 |
Q |
| |
|
||||| ||||| ||||||| || |||| ||| |||| |||||||||| || |||||| | |||||| | |||||||||||| |||||||||||||||||| |
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|
| T |
41784846 |
taactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcata |
41784747 |
T |
|
| Q |
794 |
gtttgttc |
801 |
Q |
| |
|
|| ||||| |
|
|
| T |
41784746 |
gtatgttc |
41784739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 89 - 569
Target Start/End: Complemental strand, 10834795 - 10834316
Alignment:
| Q |
89 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
188 |
Q |
| |
|
|||||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||| |
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| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
|
| Q |
189 |
tggtgcaacaagcgg-atattgtcttccattttcttcctcaacttttctgccaattcttccattttcatttcagtcgatcgctgattcaacataagttta |
287 |
Q |
| |
|
| ||||||||||| ||||||| ||||||| ||| || || | | |||||||||||||||||||| |||| | | || | |||||||| | | ||| |
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|
| T |
10834695 |
tagtgcaacaagccctatattgttttccattctctatctaaaatctcctgccaattcttccattttcctttctgccagtcaccgattcaacctgaactta |
10834596 |
T |
|
| Q |
288 |
ttcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtca |
387 |
Q |
| |
|
|| || ||||||||||||||||||| ||| |||||||| ||||||| |||| || |||||| |||||||| ||||| |||||||||||||| || | |
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|
| T |
10834595 |
tttgacatgattatggtttgtttttggtccacatttatttggtcaatggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaa |
10834497 |
T |
|
| Q |
388 |
actttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaatt |
487 |
Q |
| |
|
|||||||| | ||| |||| | |||||| | |||||| ||||| | |||||||||||||||||| ||| || |||||| ||||| |||| ||||| || |
|
|
| T |
10834496 |
actttgtggttaaattttccacctttgccaggctttcagcatactgcttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagtt |
10834398 |
T |
|
| Q |
488 |
gtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttt |
569 |
Q |
| |
|
|| || |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10834397 |
atcgaaatctagtcccatgtcattaacttcagcttttaaagccatgatctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 2281450 - 2281576
Alignment:
| Q |
96 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
195 |
Q |
| |
|
||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
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|
| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
2281549 |
T |
|
| Q |
196 |
acaagcggatattgtcttccattttct |
222 |
Q |
| |
|
| | | ||||| ||||||||||||| |
|
|
| T |
2281550 |
atatatgtatattatcttccattttct |
2281576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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