View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054_low_2 (Length: 352)
Name: NF0054_low_2
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054_low_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 40125629 - 40125309
Alignment:
| Q |
30 |
tattcgtcatagacctcacatccacaacttaaacatctactttttcttaaccaaaaataagataaaaatacaactactttattttagccaaagagcagct |
129 |
Q |
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| T |
40125629 |
tattcgtcatagacctcacatccacaacttaaacatctactttttcttaaccaaaaataagataaaaatacaactactttattttagccaaagagcagct |
40125530 |
T |
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| Q |
130 |
tcaaattaaaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaacca |
229 |
Q |
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| T |
40125529 |
tccaa-----acaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaacta |
40125435 |
T |
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| Q |
230 |
ggtgtgattaccttttcatcct---cattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggcactaatggag |
326 |
Q |
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| T |
40125434 |
ggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctctaatggag |
40125335 |
T |
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| Q |
327 |
gagacacttcaacagtgtctttgttt |
352 |
Q |
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| T |
40125334 |
gggacacttcaacagtgtctttgttt |
40125309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 40093054 - 40092837
Alignment:
| Q |
138 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaaccaggtgtgat |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| || || |
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| T |
40093054 |
aaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggttat |
40092955 |
T |
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| Q |
238 |
taccttttcatcct---cattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggcactaatggaggagacact |
334 |
Q |
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| T |
40092954 |
tacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctctaatggaggggacact |
40092855 |
T |
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| Q |
335 |
tcaacagtgtctttgttt |
352 |
Q |
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|||||| ||||||||||| |
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| T |
40092854 |
tcaacactgtctttgttt |
40092837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 138 - 346
Target Start/End: Complemental strand, 40121874 - 40121663
Alignment:
| Q |
138 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaaccaggtgtgat |
237 |
Q |
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||||| |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
40121874 |
aaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgttat |
40121775 |
T |
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| Q |
238 |
taccttttcatcctcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggcactaatggaggagacact |
334 |
Q |
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||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||||||||||||| |||||| |
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| T |
40121774 |
tacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacact |
40121675 |
T |
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| Q |
335 |
tcaacagtgtct |
346 |
Q |
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|||||| ||||| |
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| T |
40121674 |
tcaacattgtct |
40121663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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