View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054_low_3 (Length: 325)
Name: NF0054_low_3
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 30099203 - 30098899
Alignment:
| Q |
1 |
atagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099203 |
atagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttg |
30099104 |
T |
|
| Q |
101 |
ctattcctttagcataaccaaaataagaagctccattaacatagttacctacaagttcaaagcagacagttcgattggtaagctcagagacaccgaatga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099103 |
ctattcctttggcataaccaaaataagaagctccattaacatagttacctacaagttcaaagcagacagttcgattggtaagctcagagacaccgaatga |
30099004 |
T |
|
| Q |
201 |
gtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaaccacnnnnnnnntagttacctgcaacagttgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
30099003 |
gtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaacaacaaaaaaaatagttacctgcaacagttgat |
30098904 |
T |
|
| Q |
301 |
gatgt |
305 |
Q |
| |
|
||||| |
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| T |
30098903 |
gatgt |
30098899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 30091710 - 30091914
Alignment:
| Q |
1 |
atagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
30091710 |
atagcttggtccattccagctaaaacatcagaagccaaaagaccctcttcccaaatgactttgtacatagcaagcctagctcttggtgcaatgcctcttg |
30091809 |
T |
|
| Q |
101 |
ctattcctttagcataaccaaaataagaagctccattaacatagttacctacaagttcaaagcagacagttcgattggtaagctcagagacaccgaatga |
200 |
Q |
| |
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||| |||||||||||||||||||||||||| |||||| |||||||||||| |||| | |||||||||| |||||| ||||||| |||| || ||| || |
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| T |
30091810 |
ctactcctttagcataaccaaaataagaagttccattgacatagttacct-gaagtccgaagcagacagctcgattagtaagctgagagttacagaagga |
30091908 |
T |
|
| Q |
201 |
gtacta |
206 |
Q |
| |
|
|||||| |
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| T |
30091909 |
gtacta |
30091914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 30087733 - 30087879
Alignment:
| Q |
4 |
gcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgcta |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30087733 |
gcttggtccattccagctaaaacatcagaagccataacatcctcttcccaaatgactttgtacatagcaatcttagcttttggtgcaatgcctcttgcta |
30087832 |
T |
|
| Q |
104 |
ttcctttagcataaccaaaataagaagctccattaacatagttacct |
150 |
Q |
| |
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|||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30087833 |
ctcctttagcatagccaaaataagaagctccgttgacatagttacct |
30087879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 35171430 - 35171551
Alignment:
| Q |
1 |
atagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttg |
100 |
Q |
| |
|
|||||||| ||||| || || | ||||||||| || | |||||| || ||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| | |
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| T |
35171430 |
atagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagcttttggtgcaatacctctag |
35171529 |
T |
|
| Q |
101 |
ctattcctttagcataaccaaa |
122 |
Q |
| |
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||| ||||| ||||||||||| |
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| T |
35171530 |
ctacaccttttgcataaccaaa |
35171551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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