View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054_low_4 (Length: 247)
Name: NF0054_low_4
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1350787 - 1350565
Alignment:
| Q |
1 |
tttatcaaggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcatactccagggcatcaaaagttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350787 |
tttatcaaggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcatactccagggcatcaaaagttggt |
1350688 |
T |
|
| Q |
101 |
agaataatagcagaagcttttgaagctgcttctatttgttctataacaaagtccaaaagtgtatcatttggatctgttgtgtgatatatgcctggaaggt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350687 |
agaataatagcagaagcttttgaagctgcttctatttgttctgtaacaaagtccaaaagtgtatcatttggatctgttgtgtgatatatgcctggaaggt |
1350588 |
T |
|
| Q |
201 |
ttcttaaagtaatgttcttcatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
1350587 |
ttcttaaagtaatgttcttcatg |
1350565 |
T |
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