View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0054_low_6 (Length: 209)
Name: NF0054_low_6
Description: NF0054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0054_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 40121595 - 40121795
Alignment:
| Q |
6 |
agcagcacagaccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgc |
105 |
Q |
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| T |
40121595 |
agcaccacagaccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgc |
40121694 |
T |
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| Q |
106 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgtt |
205 |
Q |
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| T |
40121695 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgtt |
40121791 |
T |
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| Q |
206 |
ggaa |
209 |
Q |
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|||| |
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| T |
40121792 |
ggaa |
40121795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 40092811 - 40092975
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatg---aggaaaaggaggtaatatgtacacctagtttgttggaa |
209 |
Q |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaa |
40092975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 40125283 - 40125447
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatg---aggaaaaggaggtaatatgtacacctagtttgttggaa |
209 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaa |
40125447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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