View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0055_high_1 (Length: 548)
Name: NF0055_high_1
Description: NF0055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0055_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 2 - 548
Target Start/End: Complemental strand, 8458245 - 8457699
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgacagcttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgagactgcatgcgc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8458245 |
catcacgcagacgccaaaattctctcttgacagcttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgaaactgcatgcgt |
8458146 |
T |
|
| Q |
102 |
atcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgcttagttttcaaaccttcatttaacatacttagga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458145 |
atcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgcttagttttcaaaccttcatttaacatacttagga |
8458046 |
T |
|
| Q |
202 |
caaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattgattattcgttgtctatga |
301 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458045 |
caaaatgttgggtacctggagaattcccttcgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattgattattcgttgtctatgg |
8457946 |
T |
|
| Q |
302 |
ctatctgcaaagagtaaaaaataagagagctgagtgtagaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaacaaaaaagtattca |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8457945 |
ttatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattca |
8457846 |
T |
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| Q |
402 |
tttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataaca |
501 |
Q |
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| T |
8457845 |
tttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataaca |
8457746 |
T |
|
| Q |
502 |
gtggctttgctccttcaatatattctttcacatgttttggtgaatat |
548 |
Q |
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| T |
8457745 |
ttggctttggtccttcaatatattctttcacatattttggtgaatat |
8457699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 185 - 547
Target Start/End: Original strand, 6827278 - 6827637
Alignment:
| Q |
185 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
284 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
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| T |
6827278 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
6827377 |
T |
|
| Q |
285 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtagaatgaaaaagaaatattgaaaggccaatgtattcatatacttag |
384 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||| |
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| T |
6827378 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttag |
6827477 |
T |
|
| Q |
385 |
taacaaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaata |
484 |
Q |
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|||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
6827478 |
taaccaaaaagtattcatttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaata |
6827574 |
T |
|
| Q |
485 |
ctccccaacagataacagtggctttgctccttcaatatattctttcacatgttttggtgaata |
547 |
Q |
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|||||| |||||||||||||| | ||||||||||||||| ||||| |||| |||||||||||| |
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| T |
6827575 |
ctccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttggtgaata |
6827637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6827197 - 6827279
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgacagc-ttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatat |
83 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6827197 |
catcacgcagacgccagaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatat |
6827279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 185 - 547
Target Start/End: Complemental strand, 9822866 - 9822507
Alignment:
| Q |
185 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
284 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
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| T |
9822866 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
9822767 |
T |
|
| Q |
285 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtagaatgaaaaagaaatattgaaaggccaatgtattcatatacttag |
384 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||| |
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| T |
9822766 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttag |
9822667 |
T |
|
| Q |
385 |
taacaaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaata |
484 |
Q |
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|||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
9822666 |
taaccaaaaagtattcatttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaata |
9822570 |
T |
|
| Q |
485 |
ctccccaacagataacagtggctttgctccttcaatatattctttcacatgttttggtgaata |
547 |
Q |
| |
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|||||| |||||||||||||| | ||||||||||||||| ||||| |||| |||||||||||| |
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| T |
9822569 |
ctccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttggtgaata |
9822507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 9822947 - 9822865
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgacagc-ttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatat |
83 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9822947 |
catcacgcagacgccataattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatat |
9822865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 328 - 547
Target Start/End: Original strand, 27964065 - 27964280
Alignment:
| Q |
328 |
gagctgagtgtagaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaacaaaaaagtattcatttatttgatgaattagaattttaag |
427 |
Q |
| |
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||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
27964065 |
gagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttattc-atgaatgagaattttaag |
27964163 |
T |
|
| Q |
428 |
cagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattct |
527 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
27964164 |
ca---taccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggctttgctccttcaatatactct |
27964260 |
T |
|
| Q |
528 |
ttcacatgttttggtgaata |
547 |
Q |
| |
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|| |||| ||| |||||||| |
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| T |
27964261 |
ttaacatatttaggtgaata |
27964280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 27964011 - 27964043
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgacag |
34 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
27964011 |
catcacgcagacgccaaaattctatcttgacag |
27964043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 25802627 - 25802704
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgacagc-ttcctacaaataatggtaacatgaaaaaatgaattcaatacct |
78 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25802627 |
catcacgcagacgccaaaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacct |
25802704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 18361193 - 18361263
Alignment:
| Q |
2 |
catcacgcagacgccaaaattctctcttgaca-gcttcctacaaataatggtaacatgaaaaaatgaattc |
71 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
18361193 |
catcacgcagacgccaaaattctatcttgacatgattcctacaaataatggtaacatgagaaaatgaattc |
18361263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 18361265 - 18361345
Alignment:
| Q |
186 |
tttaacatacttaggacaaaatgttgggtacctggaga--attccctttgttgtgaagtcaaatgcagttgaaagctgtcc |
264 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||| |
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|
| T |
18361265 |
tttaacatacttaagacaaaatgctgggtacctggagatcattcccttggctgtgaagtcatatgcagttgaaagttgtcc |
18361345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 18361362 - 18361425
Alignment:
| Q |
346 |
aaaagaaatattgaaaggccaatgtattcatatacttagtaacaaaaaagtattcatttatttg |
409 |
Q |
| |
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||||||| |||||||||| |||||||||| || ||||||||| |||||||||||||||||||| |
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|
| T |
18361362 |
aaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttatttg |
18361425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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