View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0055_low_2 (Length: 456)
Name: NF0055_low_2
Description: NF0055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0055_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 49766667 - 49766881
Alignment:
| Q |
6 |
gcagatgcagaaacagaggttttcttcttctttctcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccat |
105 |
Q |
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| T |
49766667 |
gcagatgcagaaacagaggttttcttcttctttttcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccat |
49766766 |
T |
|
| Q |
106 |
gattttcatttttagtaggacaaacagagagtgagagagaagaagatgaagttacagcagttgtagctgatacagtgttgatg---gaagaagaagaagg |
202 |
Q |
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| T |
49766767 |
gattttcatttttagtaggacaaacagagagtgagagagaagaagatgaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaagg |
49766866 |
T |
|
| Q |
203 |
acaatgacgagtagt |
217 |
Q |
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| T |
49766867 |
acaatgacgagtagt |
49766881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 49766980 - 49767020
Alignment:
| Q |
316 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatc |
356 |
Q |
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| T |
49766980 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatc |
49767020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 14137753 - 14137719
Alignment:
| Q |
318 |
agtttaccaagtttttcttgaagacaaaaagcaca |
352 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14137753 |
agtttaccaagtttttcttgaagacaaaaagcaca |
14137719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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