View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0055_low_3 (Length: 349)
Name: NF0055_low_3
Description: NF0055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0055_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 5223643 - 5223850
Alignment:
| Q |
143 |
attttcaattttctgatggtggttccactagacaccgatgcaatgaagtgtttggattgacgttcaatgatatattcttgagtctctatacaagttcaac |
242 |
Q |
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| T |
5223643 |
attttcaactttttgatggtggttcaactagacaccgatgcaatgaagtgtttggattgacgttcaatgatatattcttgagtctctatgcaaattcaac |
5223742 |
T |
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| Q |
243 |
cagagtttaaagaaacgaaaaattataggatttaactaaacgtgcgtttgtgg-aaaatccaccgctgtttcaaacccactataaattgtcctgattttt |
341 |
Q |
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|||||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5223743 |
aggagtttaaagaaacaaaaaattatagaatttaactagacgtgcgtttgtggaaaaatccaccgctgtttcaaacacactataaattgtcctgattttt |
5223842 |
T |
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| Q |
342 |
attactaa |
349 |
Q |
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|||||||| |
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| T |
5223843 |
attactaa |
5223850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 29430761 - 29430633
Alignment:
| Q |
189 |
agtgtttggattgacgttcaatgatatattcttgagtctctatacaagttcaaccagagtttaaagaaacgaaaaattataggatttaactaaacgtgcg |
288 |
Q |
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||||||||||||| |||| |||||||||||| ||| |||| |||||||||| || ||||| ||| | ||||||| |||||| | | |||||||||| |
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| T |
29430761 |
agtgtttggattggcgtttcgcgatatattcttgtgtccctatgcaagttcaacgtgaatttaatgaagccaaaaattgtaggatctgattaaacgtgcg |
29430662 |
T |
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| Q |
289 |
tttgtggaaaatccaccgctgtttcaaac |
317 |
Q |
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| T |
29430661 |
tttgtgaaaaatccacggctgttccaaac |
29430633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 6392880 - 6392811
Alignment:
| Q |
248 |
tttaaagaaacgaaaaattataggatttaactaaacgtgcgtttgtggaaaatccaccgctgtttcaaac |
317 |
Q |
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||||||||| | ||||||| |||||| | ||| ||| ||||||||||||||||||||| |||| ||||| |
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| T |
6392880 |
tttaaagaagccaaaaattgtaggatcgagctagacgcgcgtttgtggaaaatccaccgttgttccaaac |
6392811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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