View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0055_low_5 (Length: 295)
Name: NF0055_low_5
Description: NF0055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0055_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 50670268 - 50670013
Alignment:
| Q |
30 |
ataagtatatgactattgacattttctcaccaaggtatcnnnnnnnnnnnnnnnnnnctgaattgtattgaaatgaaagacaaacattttaaaaggatac |
129 |
Q |
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| T |
50670268 |
ataagtatatgactattgacattttctcaccaaggtatcaaaaaaaaaaaaaaaaaactgaattgtattgaaatgaaagacaaacattttaaaaggatac |
50670169 |
T |
|
| Q |
130 |
ttcaaaaggataatttaagtttaaacaacaataaaatgatattcagtgtaaatgtttctttacnnnnnnnnnnncgtaaaaacttaacttttgtatctca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
50670168 |
ttcaaaaggataatttaagtttaaacaacaataaaatgatattcagtgtaaatgtttctttacaaaaaaaaaaacgtaaaaacttaacttttttatctca |
50670069 |
T |
|
| Q |
230 |
acatcccaatactgtgggtgtgggggatcattgtgcagtgactgtagatatctgtg |
285 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50670068 |
acatcccaatactgtgggtgtgggggatcattgtgtagtgactgtagatatctgtg |
50670013 |
T |
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