View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0055_low_6 (Length: 258)
Name: NF0055_low_6
Description: NF0055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0055_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 5289495 - 5289703
Alignment:
| Q |
12 |
agtatcataggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacga |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289495 |
agtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacga |
5289594 |
T |
|
| Q |
112 |
agcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289595 |
agcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccag |
5289694 |
T |
|
| Q |
212 |
gcatgtcta |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
5289695 |
gcatgtcta |
5289703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 5310721 - 5310513
Alignment:
| Q |
12 |
agtatcataggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacga |
111 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310721 |
agtatcactggggccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacga |
5310622 |
T |
|
| Q |
112 |
agcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
5310621 |
agcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaaggcccaagagttttgtgagttgataatcagctccag |
5310522 |
T |
|
| Q |
212 |
gcatgtcta |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
5310521 |
gcatgtcta |
5310513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 5284622 - 5284424
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
5284622 |
gggccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtac |
5284523 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5284522 |
cacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtcta |
5284424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 5302810 - 5302612
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5302810 |
gggccacgaaatgtgacagcggtgacctctgaacatacaaccaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgc |
5302711 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| | |||||||||| |
|
|
| T |
5302710 |
cacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtcta |
5302612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 5315422 - 5315229
Alignment:
| Q |
25 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5315422 |
ccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccac |
5315323 |
T |
|
| Q |
125 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtc |
218 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5315322 |
ctgcaaagcacccttgttggtacatcatgtatcttttcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtc |
5315229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 46706796 - 46706994
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
46706796 |
gggccgcggaatgtgactgcagtgacttcagaacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgc |
46706895 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
46706896 |
ctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtcta |
46706994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 1478310 - 1478115
Alignment:
| Q |
25 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
124 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1478310 |
ccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccac |
1478211 |
T |
|
| Q |
125 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
1478210 |
ctgcaaaacatccttgttggtacatcatatacctcttcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtcta |
1478115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 1492479 - 1492284
Alignment:
| Q |
25 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
124 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
1492479 |
ccacgaaatgtgactgcagtgacttcagaacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccac |
1492380 |
T |
|
| Q |
125 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
1492379 |
ctgcaaaacaaccttgctggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtcta |
1492284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 1482504 - 1482309
Alignment:
| Q |
25 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
124 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1482504 |
ccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacctttattattctcagccaagtccttggccaaacgaagcaccgtcccac |
1482405 |
T |
|
| Q |
125 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
||||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
1482404 |
ctgcaaagcatccttgttggtacatcatgtatctcttcacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggcatgtcta |
1482309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 1505291 - 1505093
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||| || |||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
1505291 |
gggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcc |
1505192 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
1505191 |
cacctgcaaaacatccttgctggtacatcatgtacctcttcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtcta |
1505093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 1499533 - 1499356
Alignment:
| Q |
43 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
142 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||| || || || ||||||||||| || || ||||||||| |||||||| ||| |
|
|
| T |
1499533 |
gtgatttcagaacaaacaaccaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgcataacaccctagtt |
1499434 |
T |
|
| Q |
143 |
ggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
1499433 |
ggtacatcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtcta |
1499356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 1509438 - 1509249
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||||| |||||||| || |||||| ||||||||||||||||||||||||| ||| ||| || ||||||||||| || |||||| ||||||| |||| |
|
|
| T |
1509438 |
gggccacaaaatgtgactgcaatgactttagaacaaacaaccaacacacgagcatcttggttattttcagccaaatcctttgccaaatgaagcacagtgc |
1509339 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccag |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| || ||||| || |||||||||| ||||||| |
|
|
| T |
1509338 |
cacctgcaaaacacctttgttggtacatcatgtacctttttacatatgggtgaagacctaaaagtttggtaagttgataatgagctccag |
1509249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 1486963 - 1486785
Alignment:
| Q |
43 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
142 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| |||| |||||||||||||| || |||||| |||| || || ||||| |||||||| || ||||||| |
|
|
| T |
1486963 |
gtgacttcagaacatattaccaacacaagagcatctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaagcatccttgtt |
1486864 |
T |
|
| Q |
143 |
ggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctat |
221 |
Q |
| |
|
|||| |||||||||| |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
1486863 |
ggtatatcatataccgtttcacatccgggcaaagacctaagagttttgtgagttggtaatcggcaccaggcatgcctat |
1486785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 44128888 - 44128690
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
44128888 |
gggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgc |
44128789 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44128788 |
ctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcta |
44128690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 44133093 - 44132895
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
44133093 |
gggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgc |
44132994 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44132993 |
ctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcta |
44132895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 44141515 - 44141317
Alignment:
| Q |
22 |
gggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgc |
121 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
44141515 |
gggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgc |
44141416 |
T |
|
| Q |
122 |
cacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44141415 |
ctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcta |
44141317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 24163607 - 24163796
Alignment:
| Q |
31 |
aatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaa |
130 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |
|
|
| T |
24163607 |
aatgtgattgcggtaacttcagaacaaacaaccaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccacctgcaa |
24163706 |
T |
|
| Q |
131 |
aacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
24163707 |
aacacccttgttggtacatcatatacctttttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatcta |
24163796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 37859202 - 37859368
Alignment:
| Q |
52 |
gaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatca |
151 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37859202 |
gaacaaactaccaacacacgagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccaccagcaaaacaaccttgttggtacatca |
37859301 |
T |
|
| Q |
152 |
tataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtc |
218 |
Q |
| |
|
| || | ||||||||||||||||| |||||||| ||||| || ||||| ||||| || |||||||| |
|
|
| T |
37859302 |
tgtaacgcttcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggcatgtc |
37859368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 37863228 - 37863391
Alignment:
| Q |
52 |
gaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatca |
151 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
37863228 |
gaacaaaccaccaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaacaaccttgttgatacatca |
37863327 |
T |
|
| Q |
152 |
tataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcat |
215 |
Q |
| |
|
|||| | |||||||| || |||||||||||||| |||||||| ||||| || || |||||||| |
|
|
| T |
37863328 |
tataacgcttcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcat |
37863391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 39030344 - 39030192
Alignment:
| Q |
63 |
caacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttc |
162 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || | |||| |||||||| |||||||||||||||||||| | || |
|
|
| T |
39030344 |
caacacacgggcacctttgttgttctcagccaaatctttagccaagcgaagagccatcgcaccagcaaaacaaccttgttggtacatcatataacgcttt |
39030245 |
T |
|
| Q |
163 |
acatatggacgaagacccaagagttttgtgagttgataatcggctccaggcat |
215 |
Q |
| |
|
|||||||||| ||| || ||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
39030244 |
acatatggacaaaggcctaagagctttgtgagctgatagtcagctccaggcat |
39030192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 35251080 - 35250932
Alignment:
| Q |
67 |
acacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcacat |
166 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||| | ||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
35251080 |
acacgagcacctttattgttctcagccaaatctttagccaaacgaagaaccataccaccagcgaaacacccttgttggtacatcatataacgtttcaccg |
35250981 |
T |
|
| Q |
167 |
atggacgaagacccaagagttttgtgagttgataatcggctccaggcat |
215 |
Q |
| |
|
| |||||||| || | | ||||||||| |||||||| || |||||||| |
|
|
| T |
35250980 |
acggacgaagtcctagcaattttgtgagctgataatcagcaccaggcat |
35250932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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