View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0057_low_1 (Length: 491)
Name: NF0057_low_1
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 30 - 480
Target Start/End: Original strand, 35083741 - 35084191
Alignment:
| Q |
30 |
gctccttccccttctcttgcctcttccaacttcctttcttcttcggatctccaacgttgaagctctattgccttctgcttggctgtgagtgcttccttgc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083741 |
gctccttccccttctcttgcctcttccaacttcttttcttcttcggatctccaacgttgaagctctattgccttctgcttggctgtgagtgcttccttgc |
35083840 |
T |
|
| Q |
130 |
aagctgaactatacatttccatagtctgttttagttcaagcttgagcctcctcatctctgattcgacttcatcggtggcatcaaataaccttattgaaga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35083841 |
aagctgaactatacatttccatagtctgttttagttcaagcttgagcctcctcatctctgattcgacttcatcggtggcatcagataaccttattgaaga |
35083940 |
T |
|
| Q |
230 |
aggaccattagaaccttgggagctgaatgaatagttatccaaaggagacaacaagtcaatcgactttggtcctccaccagaataggatgaatcgaagctg |
329 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
35083941 |
aggaccattagagccttgggagctgaatgaatagttatccaaaggagacgacaagtcaatcgaccttggtcctccaccagaataggatgaagcgaagctg |
35084040 |
T |
|
| Q |
330 |
tttcttgcatcgtattcggatgaaagcctaccagtaggatgtccattactaatactactattggagtctagatcatcattgttatataatgaaggaaata |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35084041 |
tttcttgcatcgtattcggatgaaagcctaccagtaggatgtccattactaatactactattggagtctagatcatcattgttatacaatgaaggaaata |
35084140 |
T |
|
| Q |
430 |
ttcgatcaatactcggtcttccactgctcacaaatgatatatctgattcat |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35084141 |
ttcgatcaatactcggtcttccactgctcacaaatgatatatctgattcat |
35084191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 42529960 - 42529911
Alignment:
| Q |
111 |
gctgtgagtgcttccttgcaagctgaactatacatttccatagtctgttt |
160 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| || ||||| |
|
|
| T |
42529960 |
gctgttagtgcttccttacaagctgtactatacatttccattgtttgttt |
42529911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 42521755 - 42521715
Alignment:
| Q |
111 |
gctgtgagtgcttccttgcaagctgaactatacatttccat |
151 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
42521755 |
gctgttagtgcttccttacaagctgtactatacatttccat |
42521715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 981 times since January 2019
Visitors: 1288