View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_11 (Length: 314)
Name: NF0057_low_11
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 47178497 - 47178213
Alignment:
| Q |
1 |
atcaatttctttgaagtaatttgtttaacacaaatcatctagaccaattatttgctcatgataggaccaatttatttgaagtactttgttgcaaatctta |
100 |
Q |
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| T |
47178497 |
atcaatttctttgaagtaatttatttaacacaaatcatctagaccaattatttgctaatgataggaccaatttatttgaagtactttgttgcaaatctta |
47178398 |
T |
|
| Q |
101 |
atctacaactgaagatgaaatgctttgaagatagatttcaaatcgttcataaagaatcaattttgaaatcatcacaattgtgtcacctagtagaatgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47178397 |
atctacaactgaagatgaaatgctttgaagatagatttcaaatcattcataaagaatcaattttgaaatcatcacaattgtgtcacctagtagaatgagt |
47178298 |
T |
|
| Q |
201 |
acagtcaggtacaagctcaagtatgcacagaaatacctccaaaatagtacaagttatgcgtgacatttttgtacaatgatacaag |
285 |
Q |
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| T |
47178297 |
acagtcaggtacaagctcaagtatgcacagaaatacctccaaaatagtacaagttatgcgtgacatttttgtacaatgatacaag |
47178213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 27097799 - 27097759
Alignment:
| Q |
150 |
taaagaatcaattttgaaatcatcacaattgtgtcacctag |
190 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
27097799 |
taaagaatcaattttgaaatcatcacaactgtctcacctag |
27097759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 27180504 - 27180544
Alignment:
| Q |
150 |
taaagaatcaattttgaaatcatcacaattgtgtcacctag |
190 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
27180504 |
taaagaatcaattttgaaatcatcacaactgtctcacctag |
27180544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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