View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_13 (Length: 279)
Name: NF0057_low_13
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 42201585 - 42201348
Alignment:
| Q |
30 |
ccatgttggtgatggtatatggaatggccaatggagaaactttcttaactcccttttgaacatgattctgaatattagtggttaaattggttaaacctcc |
129 |
Q |
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| T |
42201585 |
ccatgttggtgatggtatatggaatggccaatggagaaactttcttaactcccttttgaacatgattctgaatattagtggttaaattggttaaacctcc |
42201486 |
T |
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| Q |
130 |
aattgctgatcccaatagtattcgtattcttcctttgtccatctgttagnnnnnnncaaagtgtatgttgtttgtggtatcaatcctcagttaggcaatt |
229 |
Q |
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| T |
42201485 |
aattgctgatccctatagtattcctattcttcctttgtccatctgttag-ataaaacaaagtgtatgttgtttgtggtatcaatcctctgttaggcaatt |
42201387 |
T |
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| Q |
230 |
tcaaaaaatacttttgacttaccttgttaaggacttcat |
268 |
Q |
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| T |
42201386 |
tcaaaaaatacttttgacttaccttgttaaggacttcat |
42201348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 42195427 - 42195391
Alignment:
| Q |
232 |
aaaaaatacttttgacttaccttgttaaggacttcat |
268 |
Q |
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||||||||| |||||||||| |||||||||||||||| |
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| T |
42195427 |
aaaaaatacctttgacttacattgttaaggacttcat |
42195391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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