View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0057_low_15 (Length: 265)

Name: NF0057_low_15
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0057_low_15
NF0057_low_15
[»] chr1 (2 HSPs)
chr1 (12-237)||(42730601-42730826)
chr1 (29-116)||(28347329-28347416)
[»] chr2 (1 HSPs)
chr2 (13-185)||(40352082-40352254)
[»] chr4 (2 HSPs)
chr4 (13-185)||(21716183-21716355)
chr4 (37-108)||(51742176-51742244)
[»] scaffold0041 (2 HSPs)
scaffold0041 (16-101)||(96356-96441)
scaffold0041 (13-101)||(88348-88436)
[»] chr7 (2 HSPs)
chr7 (16-101)||(40869841-40869926)
chr7 (13-101)||(40877847-40877935)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 42730826 - 42730601
Alignment:
Q  12 atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730826 atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc 42730727  T
Q  112 attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730726 attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta 42730627  T
Q  212 cagcttcaacaacagattcagctcct 237  Q
    ||||||||||||||||||||||||||    
T  42730626 cagcttcaacaacagattcagctcct 42730601  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 28347416 - 28347329
Alignment:
Q  29 ttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgc 116  Q
    |||||||||||||||| || | ||| |||||||| |||||||| | ||| |||||||| || |||||||||||| |||| ||||||||    
T  28347416 ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctgcattgc 28347329  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 40352082 - 40352254
Alignment:
Q  13 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || || ||||| ||||||||||||||||||  ||    
T  40352082 tgaacagaagaaatagttcccatgaaccaactaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctca 40352181  T
Q  113 ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa 185  Q
    | |||| |||||| |  |||  ||||| |||||| ||||||||||| ||||| |||||||| || ||||||||    
T  40352182 tagcagctttaacagctgaagtcttaatacaaaactcaggagtacttgctctaggataataaactacctcaaa 40352254  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 21716355 - 21716183
Alignment:
Q  13 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca 112  Q
    ||||||||||  || ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||||||   ||    
T  21716355 tgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctca 21716256  T
Q  113 ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa 185  Q
    | ||||  || || |  ||| |||||||||| || |||||||| |||||||||||||| || ||||| |||||    
T  21716255 tagcagccttcacagctgaagccttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaa 21716183  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 51742244 - 51742176
Alignment:
Q  37 aaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatt 108  Q
    ||||||||||| |||||||||||||||||||  || ||||| || || |||| |||||||||||||||||||    
T  51742244 aaccaactaatactagaagaatcctcagttt--aatggcatctt-aaactcacaccagaacaccattgaatt 51742176  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 96441 - 96356
Alignment:
Q  16 acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 101  Q
    ||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  ||||| ||||| ||||| |||| ||||||    
T  96441 acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca 96356  T

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Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 88436 - 88348
Alignment:
Q  13 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 101  Q
    |||||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  | ||| ||||| ||||| |||| ||||||    
T  88436 tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca 88348  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 40869841 - 40869926
Alignment:
Q  16 acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 101  Q
    ||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  ||||| ||||| ||||| |||| ||||||    
T  40869841 acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca 40869926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 40877847 - 40877935
Alignment:
Q  13 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 101  Q
    |||||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  | ||| ||||| ||||| |||| ||||||    
T  40877847 tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca 40877935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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