View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_19 (Length: 202)
Name: NF0057_low_19
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 35083900 - 35083741
Alignment:
| Q |
19 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
118 |
Q |
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| T |
35083900 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
35083801 |
T |
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| Q |
119 |
tcaacgttggagatccgaagaagaaaggaagttggaagaggcaagagaaggggaaggagc |
178 |
Q |
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| T |
35083800 |
tcaacgttggagatccgaagaagaaaagaagttggaagaggcaagagaaggggaaggagc |
35083741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 42529911 - 42529960
Alignment:
| Q |
48 |
aaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagc |
97 |
Q |
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| T |
42529911 |
aaacaaacaatggaaatgtatagtacagcttgtaaggaagcactaacagc |
42529960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 42521715 - 42521755
Alignment:
| Q |
57 |
atggaaatgtatagttcagcttgcaaggaagcactcacagc |
97 |
Q |
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| T |
42521715 |
atggaaatgtatagtacagcttgtaaggaagcactaacagc |
42521755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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