View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0057_low_2 (Length: 434)

Name: NF0057_low_2
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0057_low_2
NF0057_low_2
[»] chr7 (13 HSPs)
chr7 (289-424)||(21949207-21949342)
chr7 (341-424)||(9174404-9174487)
chr7 (341-424)||(46809518-46809600)
chr7 (341-424)||(6617508-6617590)
chr7 (347-424)||(34638018-34638095)
chr7 (347-424)||(42054104-42054181)
chr7 (289-345)||(6617695-6617754)
chr7 (289-345)||(34637848-34637907)
chr7 (289-345)||(42054292-42054351)
chr7 (289-345)||(46809704-46809763)
chr7 (298-329)||(31078855-31078886)
chr7 (341-371)||(31079007-31079037)
chr7 (289-342)||(9174238-9174296)
[»] chr6 (6 HSPs)
chr6 (341-424)||(15153182-15153265)
chr6 (347-424)||(18898423-18898500)
chr6 (341-424)||(22515012-22515093)
chr6 (289-345)||(15153014-15153073)
chr6 (289-345)||(22515198-22515257)
chr6 (289-342)||(18898253-18898309)
[»] chr3 (14 HSPs)
chr3 (341-424)||(3335474-3335557)
chr3 (341-424)||(37969654-37969736)
chr3 (341-411)||(4061909-4061979)
chr3 (341-411)||(28413587-28413657)
chr3 (342-410)||(22402897-22402965)
chr3 (341-424)||(33951205-33951285)
chr3 (289-345)||(3335313-3335369)
chr3 (341-424)||(47329565-47329647)
chr3 (289-345)||(28413423-28413482)
chr3 (292-345)||(4061748-4061804)
chr3 (292-345)||(37969841-37969897)
chr3 (289-329)||(47329006-47329046)
chr3 (289-345)||(22403033-22403092)
chr3 (289-345)||(33951044-33951103)
[»] chr5 (17 HSPs)
chr5 (344-424)||(39005360-39005441)
chr5 (341-424)||(16485424-16485506)
chr5 (63-153)||(3020354-3020439)
chr5 (341-424)||(5807860-5807942)
chr5 (341-424)||(22494006-22494089)
chr5 (347-424)||(16482975-16483052)
chr5 (344-424)||(1594077-1594156)
chr5 (344-424)||(40835519-40835598)
chr5 (341-408)||(39560681-39560748)
chr5 (289-345)||(39005549-39005608)
chr5 (292-345)||(16485611-16485667)
chr5 (289-345)||(1593910-1593969)
chr5 (289-345)||(5807696-5807755)
chr5 (289-345)||(16483163-16483222)
chr5 (289-345)||(40835706-40835765)
chr5 (30-70)||(3015365-3015405)
chr5 (296-343)||(39560525-39560575)
[»] chr1 (21 HSPs)
chr1 (344-424)||(24780344-24780424)
chr1 (341-424)||(28641093-28641175)
chr1 (342-410)||(45541909-45541977)
chr1 (341-420)||(2844438-2844517)
chr1 (341-424)||(8111164-8111247)
chr1 (341-420)||(38980574-38980653)
chr1 (341-424)||(41400640-41400722)
chr1 (347-424)||(18415013-18415090)
chr1 (347-424)||(32519278-32519355)
chr1 (342-410)||(49008662-49008730)
chr1 (344-424)||(2028304-2028383)
chr1 (289-345)||(18415201-18415260)
chr1 (289-345)||(28640929-28640988)
chr1 (289-345)||(2028491-2028550)
chr1 (289-345)||(21327534-21327593)
chr1 (289-345)||(24780530-24780589)
chr1 (293-345)||(32519112-32519167)
chr1 (289-345)||(45542083-45542142)
chr1 (289-345)||(49008836-49008895)
chr1 (289-327)||(41400476-41400514)
chr1 (289-345)||(8111352-8111411)
[»] chr4 (11 HSPs)
chr4 (341-424)||(39296396-39296478)
chr4 (341-424)||(48429903-48429985)
chr4 (341-424)||(36315733-36315816)
chr4 (341-424)||(36329942-36330025)
chr4 (347-424)||(5948665-5948742)
chr4 (344-424)||(34806765-34806846)
chr4 (342-394)||(27019813-27019865)
chr4 (289-345)||(5948853-5948912)
chr4 (289-345)||(27019648-27019707)
chr4 (289-345)||(48430090-48430149)
chr4 (289-345)||(34806954-34807013)
[»] chr8 (9 HSPs)
chr8 (341-424)||(39617420-39617502)
chr8 (347-424)||(6421386-6421463)
chr8 (347-424)||(18380883-18380960)
chr8 (341-397)||(9224978-9225034)
chr8 (289-344)||(12498121-12498179)
chr8 (289-345)||(9225139-9225198)
chr8 (289-345)||(18380713-18380772)
chr8 (289-345)||(39617256-39617315)
chr8 (289-329)||(6421590-6421630)
[»] scaffold0009 (2 HSPs)
scaffold0009 (347-424)||(194180-194257)
scaffold0009 (289-342)||(194010-194066)
[»] scaffold0088 (2 HSPs)
scaffold0088 (341-424)||(26161-26244)
scaffold0088 (290-344)||(26352-26409)
[»] chr2 (2 HSPs)
chr2 (341-420)||(4647464-4647543)
chr2 (289-344)||(40268427-40268485)
[»] scaffold0725 (2 HSPs)
scaffold0725 (341-424)||(299-382)
scaffold0725 (290-345)||(488-546)
[»] scaffold0256 (2 HSPs)
scaffold0256 (345-424)||(3564-3641)
scaffold0256 (293-345)||(3400-3455)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 289 - 424
Target Start/End: Original strand, 21949207 - 21949342
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttggggacatgccaactctgttataatctaccattatggctctgccctctctttagaaatctt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21949207 gtagtactttatcttcatatttaaaattgagacagagttggggacatgccaactctgttataatctaccattatggctctgccctctctttagaaatctt 21949306  T
Q  389 tcgccacctcacccccttttttccgaaaccttcatc 424  Q
     ||||||||||||||||||||||| |||||||||||    
T  21949307 ccgccacctcacccccttttttccaaaaccttcatc 21949342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 9174404 - 9174487
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  9174404 ctctgttataatataccatcatggctctgccctctctttagaaatcttccgccacctcacccccttttttacgaaaccttcatc 9174487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 46809600 - 46809518
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  46809600 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttt-caaaaccttcatc 46809518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 6617590 - 6617508
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  6617590 ctctattataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttt-cgataccttcatc 6617508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 34638018 - 34638095
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  34638018 tataatctaccattatggctctgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 34638095  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 42054181 - 42054104
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  42054181 tataatctaccattatggctctgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 42054104  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 6617754 - 6617695
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  6617754 gtagtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 6617695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 34637848 - 34637907
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  34637848 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 34637907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 42054351 - 42054292
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  42054351 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 42054292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 46809763 - 46809704
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  46809763 gtagtactttatcttcatatttaaaattaagacagagttggcacggacatgccaactctg 46809704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 329
Target Start/End: Original strand, 31078855 - 31078886
Alignment:
Q  298 tatcttcatatttaaaattgagacagagttgg 329  Q
    ||||||||||||||||||||||||||||||||    
T  31078855 tatcttcatatttaaaattgagacagagttgg 31078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 371
Target Start/End: Original strand, 31079007 - 31079037
Alignment:
Q  341 ctctgttataatctaccattatggctctgcc 371  Q
    |||||||||||||||||||||||||||||||    
T  31079007 ctctgttataatctaccattatggctctgcc 31079037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 9174238 - 9174296
Alignment:
Q  289 gtagtactttatcttcatat--ttaaaattgagacagagttg---gggacatgccaact 342  Q
    ||||||||||||||||||||  |||||||||||||| |||||   ||||||||||||||    
T  9174238 gtagtactttatcttcatataattaaaattgagacaaagttgacagggacatgccaact 9174296  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 15153182 - 15153265
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  15153182 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcgccccctttttttcgaaaccttcatc 15153265  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 18898423 - 18898500
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  18898423 tataatctaccattatggctccgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 18898500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 22515093 - 22515012
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  22515093 ctctattataatctac-attatggctcttccctctctttagaaatcttccgccacctcgccccctttttt-cgaaaccttcatc 22515012  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 15153014 - 15153073
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  15153014 gtagtactttatcttcatatttaaaattcagacagagttggcagggacatgccaactctg 15153073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 22515257 - 22515198
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  22515257 gtagtactttatcttcatatttaaaattaagacagagttggcatggacatgccaactctg 22515198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 18898253 - 18898309
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaact 342  Q
    |||||||||||| |||||||||||||||||||||||||||   ||||||||||||||    
T  18898253 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaact 18898309  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 3335474 - 3335557
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3335474 ctctgtaataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttttcgaaaccttcatc 3335557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 37969736 - 37969654
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  37969736 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttt-cgataccttcatc 37969654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 4061909 - 4061979
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4061909 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcacccccttttttc 4061979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 28413587 - 28413657
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttc 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28413587 ctctattataatctaccattatggctctgccctctctttagaaatcttccgccacctcacccccttttttc 28413657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 22402965 - 22402897
Alignment:
Q  342 tctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctttttt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  22402965 tctgttataatctaccattatggctctgccctctctttagaaatcttctgccacctcaccccctttttt 22402897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 33951205 - 33951285
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||   |||||||| |||||||||||||    
T  33951205 ctctgttataatctaccattatggctctgccatctctttagaaatcttctgccacctca---cctttttttcgaaaccttcatc 33951285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 3335313 - 3335369
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttggggacatgccaactctg 345  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3335313 gtagtactatatcttcatatttaaaattgagacagagttggggacatgccaactctg 3335369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 47329565 - 47329647
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||    
T  47329565 ctctgttataatctactattttggttctgccctctctttagaaatcttccgccacctca-cccttttttttcgaaaccttcatc 47329647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 28413423 - 28413482
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  28413423 gtagtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 28413482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 4061748 - 4061804
Alignment:
Q  292 gtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  4061748 gtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 4061804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 37969897 - 37969841
Alignment:
Q  292 gtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  37969897 gtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 37969841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 47329006 - 47329046
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg 329  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  47329006 gtagtacttgatcttcatatttaaaattgagacagagttgg 47329046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 22403092 - 22403033
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||| ||||||||||  ||||||   |||||||||||||||||    
T  22403092 gtagtactttatcttcatattcaaaattgagatggagttggcagggacatgccaactctg 22403033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 33951044 - 33951103
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagtt---ggggacatgccaactctg 345  Q
    |||||||||||||||| ||||||||||||| ||||||||    |||||||||||||||||    
T  33951044 gtagtactttatcttcgtatttaaaattgaaacagagttcgcagggacatgccaactctg 33951103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 39005441 - 39005360
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctt-ttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  39005441 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttttcgaaaccttcatc 39005360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 16485506 - 16485424
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  16485506 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttt-cgataccttcatc 16485424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 3020354 - 3020439
Alignment:
Q  63 tagtgggaaacacccaagtcgatcaattcaagtaagaagtgatataaaatccaaatcaaattttgtcacgatcatgagacacatatactat 153  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3020354 tagtgggaaacacccaagtcgatcaa-----gtaagaagtgatataaaatccaaatcaaattttgtctcgatcatgagacacatatactat 3020439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 5807860 - 5807942
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||    
T  5807860 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcgccccctttttt-caaaaccttcatc 5807942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 22494006 - 22494089
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||    
T  22494006 ctctcttataatctaccattatggctctgccctctcttaagaaatcttccgccacctcgccccctttttttcgaaaccttcatc 22494089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 16483052 - 16482975
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  16483052 tataatctaccattatggctctgccctgtctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 16482975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 1594077 - 1594156
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||    
T  1594077 tgttataatctactattatggctctgccctctctttagaaatcttctgccacctcaccccctttttt-cgataccttcatc 1594156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 40835598 - 40835519
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||    
T  40835598 tgttataatctaccattatgactctgccctctctttagaaatcttctgccacctcaccccctttttt-cgataccttcatc 40835519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 39560681 - 39560748
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctttt 408  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  39560681 ctctcttataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccttttt 39560748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 39005608 - 39005549
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||    
T  39005608 gtagtactttatcttcatatttaaaattgagacagggttggcaaggacatgccaactctg 39005549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 16485667 - 16485611
Alignment:
Q  292 gtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  16485667 gtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 16485611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 1593910 - 1593969
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||| |||||||    
T  1593910 gtagtactttatcttcatatttaaaattgagacaaagttggcagggacatgctaactctg 1593969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 5807696 - 5807755
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    |||||||||||||||| ||||||||||| ||||||||||||   ||||||||||||||||    
T  5807696 gtagtactttatcttcgtatttaaaattaagacagagttggcacggacatgccaactctg 5807755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 16483222 - 16483163
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   | |||||||||||||||    
T  16483222 gtagtactttattttcatatttaaaattgagacagagttggcagagacatgccaactctg 16483163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 40835765 - 40835706
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||| |||||||    
T  40835765 gtagtactttatcttcatatttaaaattgagacaaagttggtagggacatgctaactctg 40835706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 3015365 - 3015405
Alignment:
Q  30 gttgttgccataaatatctggagtatggatgggtagtggga 70  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  3015365 gttgttgccataaatatctggagcatggatgggtagtggga 3015405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 39560525 - 39560575
Alignment:
Q  296 tttatcttcatatttaaaattgagacagagtt---ggggacatgccaactc 343  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||||    
T  39560525 tttatcttcatatttaaaattgagacagaattgacggggacatgccaactc 39560575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 24780424 - 24780344
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24780424 tgttataatctaccattatggttcggccctctctttagaaatctttcgccacctcaccccctttttttcgaaaccttcatc 24780344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 28641093 - 28641175
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||    
T  28641093 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcgccccctttttt-caaaaccttcatc 28641175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 45541977 - 45541909
Alignment:
Q  342 tctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctttttt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  45541977 tctgttataatctaccattatggctctgccctctctttagaaatcttctgccacctcaccccctttttt 45541909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 2844517 - 2844438
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaacctt 420  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  2844517 ctctgttataatctaccattatggctttgccctctctttagaaatcttctgcaacctcaccccctttttttcgaaacctt 2844438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 8111247 - 8111164
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||| ||||||||||| |||||||||||||    
T  8111247 ctctgttataatctaccattatggctttgccctctctttagaaattttccgccatctcgccccctttttttcgaaaccttcatc 8111164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 38980574 - 38980653
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaacctt 420  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  38980574 ctctgttataatctaccattatggctttgccctctctttagaaatcttctgcaacctcaccccctttttttcgaaacctt 38980653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 41400640 - 41400722
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||    
T  41400640 ctctgttataatctacgattatggctctgccctctctttagaaatcttccgccacctcgccccctttttt-cgaaatcttcatc 41400722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 18415090 - 18415013
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  18415090 tataatctaccattatggctccgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 18415013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 32519278 - 32519355
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  32519278 tataatctaccattatggctccgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 32519355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 49008730 - 49008662
Alignment:
Q  342 tctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctttttt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  49008730 tctgttataatctaccattatggctctgccctctctttagaaatcttctgccaccgcaccccctttttt 49008662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 2028383 - 2028304
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||| ||| |||||||||    
T  2028383 tgttataatatactattatggctctgccctctctttataaatcttctgccacctcaccccctttttt-cgataccttcatc 2028304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 18415260 - 18415201
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  18415260 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 18415201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 28640929 - 28640988
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  28640929 gtagtactttatcttcatatttaaaattaagacagagttggcacggacatgccaactctg 28640988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 2028550 - 2028491
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||| |||||||    
T  2028550 gtagtactttatcttcatatttaaaattgagacaaagttggcagggacatgctaactctg 2028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 21327534 - 21327593
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||| |||||||    
T  21327534 gtagtactttatcttcatatttaaaattgagacaaagttggcagggacatgctaactctg 21327593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 24780589 - 24780530
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||  |||||   ||||||||||||||||    
T  24780589 gtagtactttatcttcatatttaaaattgagacaaggttggcaaggacatgccaactctg 24780530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 32519112 - 32519167
Alignment:
Q  293 tactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  32519112 tactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 32519167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 45542142 - 45542083
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    ||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||    
T  45542142 gtagtactttatcttcatattcaaaattgagacggagttggcaaggacatgccaactctg 45542083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 49008895 - 49008836
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||| ||||||||||| ||||||   |||||||||||||||||    
T  49008895 gtagtactttatcttcatattcaaaattgagacggagttggcagggacatgccaactctg 49008836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 41400476 - 41400514
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagtt 327  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  41400476 gtagtactttatcttcatatttaaaattgaggcagagtt 41400514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 8111411 - 8111352
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||| ||| |||||||||||||||||||||||||||||   |||||||| ||||||||    
T  8111411 gtagtattttgtcttcatatttaaaattgagacagagttgtcagggacatgtcaactctg 8111352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 39296478 - 39296396
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  39296478 ctctgttataatctaccattatggctttgccctctctttagaaatcttccgccacctca-ccccttttttccgaaaccttcatc 39296396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 48429985 - 48429903
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  48429985 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcaccccctttttt-cgataccttcatc 48429903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 36315733 - 36315816
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||    
T  36315733 ctctcttataatctatcattatggctctgccctctctttagaaatcttccaccacctcgccccctttttttcgaaaccttcatc 36315816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 36329942 - 36330025
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||    
T  36329942 ctctcttataatctatcattatggctctgccctctctttagaaatcttccaccacctcgccccctttttttcgaaaccttcatc 36330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 5948742 - 5948665
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||  ||||||||||||    
T  5948742 tataatctaccattatggctctgccctctctttagaaatcttccgccacctcgcccacttttttttgaaaccttcatc 5948665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 34806846 - 34806765
Alignment:
Q  344 tgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcaccccctt-ttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||| |||||||||||||    
T  34806846 tgttataatctaccattatggctctgccctctctttagaaatcttctgccacctcgcccccttttttttcgaaaccttcatc 34806765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 27019813 - 27019865
Alignment:
Q  342 tctgttataatctaccattatggctctgccctctctttagaaatctttcgcca 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27019813 tctgttataatctaccattatggctctgccctctctttagaaatcttccgcca 27019865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 5948912 - 5948853
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  5948912 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 5948853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 27019648 - 27019707
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  27019648 gtagtactttatcttcatatttaaaattaagacagagttggcagggacatgccaactctg 27019707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 48430149 - 48430090
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  48430149 gtagtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 48430090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 34807013 - 34806954
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||| ||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  34807013 gtagtattttatcttcatatttaaaattgagatagagttggcagggacatgccaactctg 34806954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 39617420 - 39617502
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||    
T  39617420 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacctcgccccctttttt-caaaaccttcatc 39617502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 6421463 - 6421386
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  6421463 tataatctaccattatggctctgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 6421386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 18380883 - 18380960
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  18380883 tataatctaccattatggctccgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 18380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 9225034 - 9224978
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacct 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9225034 ctctgttataatctaccattatggctctgccctctctttagaaatcttccgccacct 9224978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 12498121 - 12498179
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactct 344  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  12498121 gtagtactttatcttcatatttaaaattgagacagagttggtagggacatgccaactct 12498179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 9225198 - 9225139
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  9225198 gtagtactttatcttcatatttaaaattgagacagagttggcaggtacatgccaactctg 9225139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 18380713 - 18380772
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  18380713 gtagtactttattttcatatttaaaattgagacagagttggcagggacatgccaactctg 18380772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 39617256 - 39617315
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactctg 345  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  39617256 gtagtactttatcttcatatttaaaattaagacagagttggcacggacatgccaactctg 39617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 6421630 - 6421590
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg 329  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6421630 gtagtactttattttcatatttaaaattgagacagagttgg 6421590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 194180 - 194257
Alignment:
Q  347 tataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  194180 tataatctaccattatggctccgccctctctttagaaatcttccgccacctcgcccccttttttttgaaaccttcatc 194257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 194010 - 194066
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaact 342  Q
    ||||| |||||| |||||||||||||||||||||||||||   ||||||||||||||    
T  194010 gtagtgctttattttcatatttaaaattgagacagagttggcagggacatgccaact 194066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 26244 - 26161
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||    
T  26244 ctctgttataatctaacattatggctttgtcctctctttagaaatcttccgccacctcgccccctctttttcgaaaccttcatc 26161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 26409 - 26352
Alignment:
Q  290 tagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactct 344  Q
    ||||||||||||||||||||| ||||||||||||| |||   ||||||||||||||||    
T  26409 tagtactttatcttcatatttgaaattgagacagatttggcagggacatgccaactct 26352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 4647464 - 4647543
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaacctt 420  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  4647464 ctctgttataatctaccattatgactttgccctctctttagaaatcttctgcaacctcaccccctttttttcgaaacctt 4647543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 40268485 - 40268427
Alignment:
Q  289 gtagtactttatcttcatatttaaaattgagacagagttgg---ggacatgccaactct 344  Q
    |||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||    
T  40268485 gtagtactttatcttcatatttaaaactgagacagagttggcacggacatgccaactct 40268427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 382 - 299
Alignment:
Q  341 ctctgttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    ||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||  |||| |||||| |||||||||||||    
T  382 ctctgttataatctagcattatggctttgtcctctctttagaaatcttccgccaccttgccccttttttttcgaaaccttcatc 299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 546 - 488
Alignment:
Q  290 tagtactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||| ||||||||||||| |||   |||||||||||||||||    
T  546 tagtactttatcttcatatttgaaattgagacagatttggcagggacatgccaactctg 488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 3564 - 3641
Alignment:
Q  345 gttataatctaccattatggctctgccctctctttagaaatctttcgccacctcacccccttttttccgaaaccttcatc 424  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||  |||||||||||||    
T  3564 gttataatataccattatggttctgccctctctttagaaatcttccaccacctcgcccccttttt--cgaaaccttcatc 3641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 3400 - 3455
Alignment:
Q  293 tactttatcttcatatttaaaattgagacagagttg---gggacatgccaactctg 345  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  3400 tactttatcttcatatttaaaattgagacagagttggcagggacatgccaactctg 3455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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