View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_3 (Length: 407)
Name: NF0057_low_3
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 26 - 394
Target Start/End: Original strand, 3569427 - 3569805
Alignment:
| Q |
26 |
cagattataagatcgatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactgggc----------acaaatattgagcttgt |
115 |
Q |
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| T |
3569427 |
cagattataagatgcatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactggaactgtatcaaaacaaatattgagcttga |
3569526 |
T |
|
| Q |
116 |
ttgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatcaacttgctctgcaattttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569527 |
ttgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatcaacttgctctgcaattttta |
3569626 |
T |
|
| Q |
216 |
ttaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaacatgtattagaaaacgatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569627 |
ttaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaacatgtattagaaaacgatg |
3569726 |
T |
|
| Q |
316 |
agttgtttgtaatagcttcataactcctaaattattttgaaatagctaactagtctctcgacctcttcattttttccct |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569727 |
agttgtttgtaatagcttcataactcctaaattattttgaaatagctaactagtctctcgacctcttcattttttccct |
3569805 |
T |
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