View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_6 (Length: 378)
Name: NF0057_low_6
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 144 - 374
Target Start/End: Original strand, 3569147 - 3569377
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgctgagataggaaatttttgttcactttatccatttcttgagtaccatat |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569147 |
gaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgctgagataggaaatttttgttcactttatccatttcttgagtaccatat |
3569246 |
T |
|
| Q |
244 |
tttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccctcttttcgaggnnnnnnnntgagttttccaccaattcgga |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
3569247 |
tttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccctattttcggggaaaaaaaatgagttttccaccaattcgga |
3569346 |
T |
|
| Q |
344 |
ttataaaatccaaacaaataagtagttcgga |
374 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
3569347 |
ttataaaatccaaacaaataagtagctcgga |
3569377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 9641346 - 9641303
Alignment:
| Q |
329 |
ttccaccaattcggattataaaatccaaacaaataagtagttcg |
372 |
Q |
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||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
9641346 |
ttccaccaattcggattctaaaatccaaataaataagtaattcg |
9641303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 16504174 - 16504209
Alignment:
| Q |
335 |
caattcggattataaaatccaaacaaataagtagtt |
370 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
16504174 |
caattcagattataaaatccaaacaaataagtagtt |
16504209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 22027323 - 22027360
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatgg |
181 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
22027323 |
gaaatgacttcagaatttcctaaaatcacatgatatgg |
22027360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 42104194 - 42104231
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatgg |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
42104194 |
gaaatgacttcagaatttcctaaaatcacatgatatgg |
42104231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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