View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0057_low_9 (Length: 352)
Name: NF0057_low_9
Description: NF0057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0057_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 29 - 336
Target Start/End: Original strand, 27560320 - 27560628
Alignment:
| Q |
29 |
agtaaacagattggataagtaacttaaggctaatagatgtagaaattttggtttttcagaagaacttaaattagnnnnnnncttctattttccatggtca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27560320 |
agtaaacagattggataagtaacttaaggctaatagatgtagaaattttggtttttcagaagaacttaaattagtttttttcttctattttccatggtca |
27560419 |
T |
|
| Q |
129 |
ctgagttagctagaatgacaaattttcaaattttacagcaactttcattgaccatcagcccaagtagcactc-gaatctgataaatacaacctcatcgat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
27560420 |
ctgagttagctagaatgacaaattttcaaattttacagcaactttcattgaccatcagcccaagtagcactccgaatctgataaatacaacttcatcgat |
27560519 |
T |
|
| Q |
228 |
gaatttcgaaaattccaaggcgtatctaaatattcagtagacataactcaatagaaaattcaaagatgcaaaactcaatactaagtcattgttattggct |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560520 |
gaatttcgaaaattccaaggcgtatctaaatattcagtagacataactcaatagaaaattcaaagatgcaaaactcaatactaagtcattgttattggct |
27560619 |
T |
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| Q |
328 |
atattatct |
336 |
Q |
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||||||||| |
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| T |
27560620 |
atattatct |
27560628 |
T |
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