View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0058_high_1 (Length: 256)
Name: NF0058_high_1
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0058_high_1
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 26722737 - 26722974
Alignment:
Q
1
tactccatttcaccatgacgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttgttaagttaatttatgaaca
100
Q
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
T
26722737
tactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggtaagttaatttatgaaca
26722836
T
Q
101
aatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttggaca
200
Q
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
26722837
aatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatat----gattttgtcaatcaatcttggaca
26722932
T
Q
201
agaaagctactgcagtagtcttggtcgacgattacggcaaca
242
Q
|||||||||||||||||||||||||||| ||||| |||||||
T
26722933
agaaagctactgcagtagtcttggtcgatgattatggcaaca
26722974
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 26837898 - 26837708
Alignment:
Q
1
tactccatttcaccatgacgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttgttaagttaatttatgaaca
100
Q
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || ||||
T
26837898
tactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcataaaca
26837805
T
Q
101
aatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttgg
197
Q
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
T
26837804
aatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatgagggattttgtccatcaaacttgg
26837708
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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