View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0058_low_1 (Length: 919)
Name: NF0058_low_1
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0058_low_1
Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 99 - 743
Target Start/End: Original strand, 48541659 - 48542300
Alignment:
Q
99
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatgcaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacaag
198
Q
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
T
48541659
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatcaaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacacg
48541758
T
Q
199
aaatgaaaagtggcatgagaagggaagtagtgtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc
298
Q
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48541759
aaatgaaaagtggcatgagaagggaagt---gtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc
48541855
T
Q
299
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact
398
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48541856
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact
48541955
T
Q
399
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat
498
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48541956
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat
48542055
T
Q
499
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctatcatcacccat
598
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
48542056
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctgtcatcacccat
48542155
T
Q
599
gaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac
698
Q
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48542156
gaatcgaagaaacgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac
48542255
T
Q
699
caaacaataagagttagtcataacaattcggataagatatcaaaa
743
Q
|||||||||||||||||||||||||||| ||||||||||||||||
T
48542256
caaacaataagagttagtcataacaatttggataagatatcaaaa
48542300
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 736 - 919
Target Start/End: Original strand, 48542488 - 48542671
Alignment:
Q
736
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagagtcataattaccgttagcatccaagtagcat
835
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
T
48542488
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagggtcataattaccgttagcatccaagtagcat
48542587
T
Q
836
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta
919
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48542588
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta
48542671
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 359 - 691
Target Start/End: Complemental strand, 9837456 - 9837124
Alignment:
Q
359
ttcagagttttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatg
458
Q
||||| ||||||||| ||||||||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||
T
9837456
ttcagggttttgctgttctttccatatccttcctgttactcgtaacttcagctctttcctatctccaccagagaagaaaagtgccatgttccggtatata
9837357
T
Q
459
attaggccgtcatgactatccttcactttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttcta
558
Q
|| ||||| |||||||| || | ||||||||||| || ||||||||||| |||||||| || || | ||||||| ||||| | ||||| || || |
T
9837356
atgaggccatcatgactgtctctaactttcttgtggctgtctctaatgctccttggactgccctcgtagattagtttgcgtccgctccctcctacctcaa
9837257
T
Q
559
agctgtagctgtagttcttggcgtctctatcatcacccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggag
658
Q
|||||||||||| || |||| ||||| ||||| |||||||| || ||||||||||||||||| || | | || |||| || || ||||||||||||||
T
9837256
gactgtagctgtagctcctggcatctctttcatctcccatgaaacggagaaatgccatgtaaactggagccattccaagttgaaaggcttcaaaatggag
9837157
T
Q
659
acaaaaatattgaccaaaacaatggaaaaccta
691
Q
||| |||||||| |||||||| ||||| |||||
T
9837156
acagaaatattgtccaaaacagtggaagaccta
9837124
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 812 - 919
Target Start/End: Complemental strand, 9836646 - 9836539
Alignment:
Q
812
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtc
911
Q
|||| |||| |||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||
T
9836646
ttactgttaacatccatgtagcattttctacttccatgggatttgacttgacataacgatgattaaaagtgcatccagaatgcatatcaactctgtggtc
9836547
T
Q
912
atccctta
919
Q
|||||||
T
9836546
gtccctta
9836539
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 813 - 883
Target Start/End: Complemental strand, 14232600 - 14232530
Alignment:
Q
813
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgc
883
Q
|||||||| |||||| || |||||||| || || |||||||||||||||||||||||||||||||||||
T
14232600
taccgttaacatccatgttgcattttcaacatcttgaggatttgatttgacataacgatggttaaaagtgc
14232530
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 813 - 902
Target Start/End: Original strand, 5037359 - 5037448
Alignment:
Q
813
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaac
902
Q
|||||||| |||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||| |||||| |||||
T
5037359
taccgttaacatccatgtggcattttcaacttcttgaggatttgatttgacgtaacgatgattaaaagtgcagccactatgcatgtcaac
5037448
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 41632791 - 41632858
Alignment:
Q
378
ttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccat
445
Q
|||||||| ||||| || ||||| ||||||||||| || ||||||||||| ||||| || ||||||||
T
41632791
ttccatattcttccggtgactctaagtttcaactccttcctatccccaccagagaaaaatagtgccat
41632858
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 692
Target Start/End: Original strand, 41633007 - 41633105
Alignment:
Q
594
cccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctac
692
Q
||||| || ||||| ||||||||||||||||| | | | ||||||| || ||||| ||||| || || |||||||| ||||||||||| || ||||||
T
41633007
cccataaaccgaaggaatgccatgtaaacaggggccatgccaagctgaaaagcttcgaaatgaaggcagaaatattggccaaaacaatgaaatacctac
41633105
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 812 - 888
Target Start/End: Complemental strand, 23403633 - 23403557
Alignment:
Q
812
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcca
888
Q
|||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||| ||| |||||
T
23403633
ttacggttagcatccatgtggcattttcaacttcatgtggatttgatttgacatatcgatggttaaaggtgaatcca
23403557
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 887
Target Start/End: Complemental strand, 736870 - 736803
Alignment:
Q
820
agcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcc
887
Q
||||||||||||||||| |||||||| |||||||| || |||||||||||||| || ||||||||
T
736870
agcatccaagtagcattctctacttcacgcggatttgacttcacataacgatggttgaatgtgcatcc
736803
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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