View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0058_low_1 (Length: 919)
Name: NF0058_low_1
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0058_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 99 - 743
Target Start/End: Original strand, 48541659 - 48542300
Alignment:
| Q |
99 |
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatgcaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacaag |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48541659 |
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatcaaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacacg |
48541758 |
T |
|
| Q |
199 |
aaatgaaaagtggcatgagaagggaagtagtgtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc |
298 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541759 |
aaatgaaaagtggcatgagaagggaagt---gtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc |
48541855 |
T |
|
| Q |
299 |
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541856 |
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact |
48541955 |
T |
|
| Q |
399 |
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541956 |
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat |
48542055 |
T |
|
| Q |
499 |
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctatcatcacccat |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48542056 |
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctgtcatcacccat |
48542155 |
T |
|
| Q |
599 |
gaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac |
698 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542156 |
gaatcgaagaaacgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac |
48542255 |
T |
|
| Q |
699 |
caaacaataagagttagtcataacaattcggataagatatcaaaa |
743 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48542256 |
caaacaataagagttagtcataacaatttggataagatatcaaaa |
48542300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 736 - 919
Target Start/End: Original strand, 48542488 - 48542671
Alignment:
| Q |
736 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagagtcataattaccgttagcatccaagtagcat |
835 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48542488 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagggtcataattaccgttagcatccaagtagcat |
48542587 |
T |
|
| Q |
836 |
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta |
919 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542588 |
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta |
48542671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 359 - 691
Target Start/End: Complemental strand, 9837456 - 9837124
Alignment:
| Q |
359 |
ttcagagttttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatg |
458 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
9837456 |
ttcagggttttgctgttctttccatatccttcctgttactcgtaacttcagctctttcctatctccaccagagaagaaaagtgccatgttccggtatata |
9837357 |
T |
|
| Q |
459 |
attaggccgtcatgactatccttcactttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttcta |
558 |
Q |
| |
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|| ||||| |||||||| || | ||||||||||| || ||||||||||| |||||||| || || | ||||||| ||||| | ||||| || || | |
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| T |
9837356 |
atgaggccatcatgactgtctctaactttcttgtggctgtctctaatgctccttggactgccctcgtagattagtttgcgtccgctccctcctacctcaa |
9837257 |
T |
|
| Q |
559 |
agctgtagctgtagttcttggcgtctctatcatcacccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggag |
658 |
Q |
| |
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|||||||||||| || |||| ||||| ||||| |||||||| || ||||||||||||||||| || | | || |||| || || |||||||||||||| |
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| T |
9837256 |
gactgtagctgtagctcctggcatctctttcatctcccatgaaacggagaaatgccatgtaaactggagccattccaagttgaaaggcttcaaaatggag |
9837157 |
T |
|
| Q |
659 |
acaaaaatattgaccaaaacaatggaaaaccta |
691 |
Q |
| |
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||| |||||||| |||||||| ||||| ||||| |
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| T |
9837156 |
acagaaatattgtccaaaacagtggaagaccta |
9837124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 812 - 919
Target Start/End: Complemental strand, 9836646 - 9836539
Alignment:
| Q |
812 |
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtc |
911 |
Q |
| |
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|||| |||| |||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |
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| T |
9836646 |
ttactgttaacatccatgtagcattttctacttccatgggatttgacttgacataacgatgattaaaagtgcatccagaatgcatatcaactctgtggtc |
9836547 |
T |
|
| Q |
912 |
atccctta |
919 |
Q |
| |
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||||||| |
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| T |
9836546 |
gtccctta |
9836539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 813 - 883
Target Start/End: Complemental strand, 14232600 - 14232530
Alignment:
| Q |
813 |
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgc |
883 |
Q |
| |
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|||||||| |||||| || |||||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
14232600 |
taccgttaacatccatgttgcattttcaacatcttgaggatttgatttgacataacgatggttaaaagtgc |
14232530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 813 - 902
Target Start/End: Original strand, 5037359 - 5037448
Alignment:
| Q |
813 |
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaac |
902 |
Q |
| |
|
|||||||| |||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||| |||||| ||||| |
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| T |
5037359 |
taccgttaacatccatgtggcattttcaacttcttgaggatttgatttgacgtaacgatgattaaaagtgcagccactatgcatgtcaac |
5037448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 41632791 - 41632858
Alignment:
| Q |
378 |
ttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccat |
445 |
Q |
| |
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|||||||| ||||| || ||||| ||||||||||| || ||||||||||| ||||| || |||||||| |
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|
| T |
41632791 |
ttccatattcttccggtgactctaagtttcaactccttcctatccccaccagagaaaaatagtgccat |
41632858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 692
Target Start/End: Original strand, 41633007 - 41633105
Alignment:
| Q |
594 |
cccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctac |
692 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| | | | ||||||| || ||||| ||||| || || |||||||| ||||||||||| || |||||| |
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| T |
41633007 |
cccataaaccgaaggaatgccatgtaaacaggggccatgccaagctgaaaagcttcgaaatgaaggcagaaatattggccaaaacaatgaaatacctac |
41633105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 812 - 888
Target Start/End: Complemental strand, 23403633 - 23403557
Alignment:
| Q |
812 |
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcca |
888 |
Q |
| |
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|||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
23403633 |
ttacggttagcatccatgtggcattttcaacttcatgtggatttgatttgacatatcgatggttaaaggtgaatcca |
23403557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 887
Target Start/End: Complemental strand, 736870 - 736803
Alignment:
| Q |
820 |
agcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcc |
887 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| || |||||||||||||| || |||||||| |
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| T |
736870 |
agcatccaagtagcattctctacttcacgcggatttgacttcacataacgatggttgaatgtgcatcc |
736803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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