View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0058_low_2 (Length: 541)
Name: NF0058_low_2
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0058_low_2
[» ] scaffold0520 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 24169568 - 24169677
Alignment:
Q
3
ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttgtcctaaaaa
100
Q
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
T
24169568
ctcaaaatgcttccattcaagatatgcgggagtcaattcaaaagtggaatgatcttggggtgaaccccgatatcttttatgccttaccttgtcctaaaaa
24169667
T
Q
101
taccacaccg
110
Q
||||||||||
T
24169668
taccacaccg
24169677
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 11583827 - 11583737
Alignment:
Q
3
ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttg
91
Q
|||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||
T
11583827
ctcaaaatgcatccattcaagatatgcgggagtccattcaaaagtggaatgatcttggggtgaacaccgataccttttttgcctcaccttg
11583737
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0520
Description:
Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 6016 - 6071
Alignment:
Q
466
tttgacattatcaaaaagggggagattgaagccttcagttatagtattgatgatgt
521
Q
|||||||| ||||||||| ||||||||||||||| ||| |||||| ||||||||||
T
6016
tttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgt
6071
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21979799 - 21979880
Alignment:
Q
416
tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc
497
Q
|||||||||||| |||||| |||||||| | |||||||||||| | |||||||| ||| |||||||||||||||||||
T
21979799
tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagattgaagc
21979880
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21982017 - 21982098
Alignment:
Q
416
tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc
497
Q
|||||||||||| |||||| |||||||| | |||||||||||| | |||||||| ||| ||||||||||||| |||||
T
21982017
tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagatcgaagc
21982098
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 22822736 - 22822703
Alignment:
Q
466
tttgacattatcaaaaagggggagattgaagcct
499
Q
|||||||| |||||||||||||||||||||||||
T
22822736
tttgacatcatcaaaaagggggagattgaagcct
22822703
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 23988279 - 23988201
Alignment:
Q
416
tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagag-ggctttgacattatcaaaaagggggagattg
493
Q
||||||||||||||||||||| |||||| | | ||| |||||| || || |||||||| ||||||||| |||||||||
T
23988279
tgtcttgtatgctaagtttcacggggagcaaattatcgtcaacatagtgggtttgacatcatcaaaaagagggagattg
23988201
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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