View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0058_low_3 (Length: 333)

Name: NF0058_low_3
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0058_low_3
NF0058_low_3
[»] chr4 (1 HSPs)
chr4 (29-322)||(43578620-43578913)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 43578913 - 43578620
Alignment:
Q  29 acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagcaagta 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43578913 acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagtaagta 43578814  T
Q  129 ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43578813 ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag 43578714  T
Q  229 aattagaatccatgtgtcgcattctttagctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43578713 aattagaatccatgtgtcgcattctttagctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct 43578620  T

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