View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0058_low_4 (Length: 333)
Name: NF0058_low_4
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0058_low_4
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 43578913 - 43578620
Alignment:
Q
29
acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagcaagta
128
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
43578913
acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagtaagta
43578814
T
Q
129
ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag
228
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43578813
ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag
43578714
T
Q
229
aattagaatccatgtgtcgcattctttggctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct
322
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43578713
aattagaatccatgtgtcgcattctttagctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct
43578620
T
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