View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0058_low_5 (Length: 256)
Name: NF0058_low_5
Description: NF0058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0058_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 26722737 - 26722974
Alignment:
| Q |
1 |
tactccatttcaccatgacgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttgttaagttaatttatgaaca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
26722737 |
tactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggtaagttaatttatgaaca |
26722836 |
T |
|
| Q |
101 |
aatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttggaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26722837 |
aatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatat----gattttgtcaatcaatcttggaca |
26722932 |
T |
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| Q |
201 |
agaaagctactgcagtagtcttggtcgacgattacggcaaca |
242 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26722933 |
agaaagctactgcagtagtcttggtcgatgattatggcaaca |
26722974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 26837898 - 26837708
Alignment:
| Q |
1 |
tactccatttcaccatgacgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttgttaagttaatttatgaaca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || |||| |
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| T |
26837898 |
tactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcataaaca |
26837805 |
T |
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| Q |
101 |
aatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttgg |
197 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
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| T |
26837804 |
aatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatgagggattttgtccatcaaacttgg |
26837708 |
T |
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