View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0059_low_1 (Length: 786)
Name: NF0059_low_1
Description: NF0059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0059_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Original strand, 48542791 - 48543477
Alignment:
| Q |
1 |
atctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatcacctagctcttgcctgc |
100 |
Q |
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| T |
48542791 |
atctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatcgcctagctcttgcctgc |
48542890 |
T |
|
| Q |
101 |
aagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgatttaatttttaagaattag |
200 |
Q |
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| T |
48542891 |
aagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgattt-----ttaagaattag |
48542985 |
T |
|
| Q |
201 |
tcatcatgttgtagacatgataaatcaaatttttctagttttactgtatttcttgtacaaggacaagaatgtcctttggtttaatggaacatttgtattc |
300 |
Q |
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| T |
48542986 |
tcatcatgttgtagacatgattaatcaaatttttctagttt-actgtatttcttgtacaaggacaagaatgtcctttggtttaatggaacatttgtattc |
48543084 |
T |
|
| Q |
301 |
tattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtataggttgtgaagctgaa |
400 |
Q |
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| T |
48543085 |
tattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtataggttgtgaagctgaa |
48543184 |
T |
|
| Q |
401 |
gaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaaactaatcaactaacatttgccaagaaaaagagaaacg |
500 |
Q |
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| T |
48543185 |
gaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaatc------actaacatttgccaagaaaaagagaaacg |
48543278 |
T |
|
| Q |
501 |
aaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggattggagggtacattgaa |
600 |
Q |
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| T |
48543279 |
aaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggattggagggtacattgaa |
48543378 |
T |
|
| Q |
601 |
ttggtgcaaaccggacattcaagaagatcatggacaccggtagtggtgggagaattgttgagtagctttgagattgaagaaaactgatggtgatgatgt |
699 |
Q |
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| T |
48543379 |
ttggtgcaaaccggacattcaagaagatcatggacactggtagtggtgggagcattgttgagtagctttgagattgaagaaaactgatggtgatgatgt |
48543477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 9836419 - 9836248
Alignment:
| Q |
1 |
atctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatcacctagctcttgcctgc |
100 |
Q |
| |
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||||||| ||| |||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| || || || || |||| |
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| T |
9836419 |
atctctggacagccaacagaggtgtatctgcaaggaagttcaagtgattctgctattttttccaatgctaaacaccgaatatcgcccagttcctgtctgc |
9836320 |
T |
|
| Q |
101 |
aagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaa |
172 |
Q |
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| T |
9836319 |
aagttgggcacctgttgtgtaccctagtcttacaagttgaacatagggtatgcccattgtgacactgcaaaa |
9836248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 571 - 637
Target Start/End: Complemental strand, 9834231 - 9834165
Alignment:
| Q |
571 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacac |
637 |
Q |
| |
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| T |
9834231 |
caaacctgatgaattggagggtacattgaattagtacaaacaggacattcaagaagctcatgaacac |
9834165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 733108 - 733059
Alignment:
| Q |
571 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattc |
620 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
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| T |
733108 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattc |
733059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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