View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0059_low_3 (Length: 432)
Name: NF0059_low_3
Description: NF0059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0059_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 175 - 430
Target Start/End: Complemental strand, 31956282 - 31956019
Alignment:
| Q |
175 |
caatgactatcttaaaatgtgaatgaagaatgttccaatattttagcatttgaattaagtttattttnnnnnnntgtaagaagtgaacatttctataata |
274 |
Q |
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| T |
31956282 |
caatgactatcttaaaatgtgaatgaagaatgttccaatattttagcatttgaattaagtttattttaaaaaaatgtaagaagtgaacatttctataata |
31956183 |
T |
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| Q |
275 |
atgaaagaaggactcaccag--------agcatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcc |
366 |
Q |
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| T |
31956182 |
atgaaagaaggattcaccaggcaagaagagtatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcc |
31956083 |
T |
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| Q |
367 |
gcttcaatcaactttttcgcttgctcaaagtattcttcccaaccgctctgtctctgctcctcct |
430 |
Q |
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| T |
31956082 |
tcttcaatcaactctttcgcttgctcaaagtattcttcccaaccgctccgtctctgcttctcct |
31956019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 293 - 431
Target Start/End: Complemental strand, 31941925 - 31941787
Alignment:
| Q |
293 |
agagcatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtccgcttcaatcaactttttcgcttgctc |
392 |
Q |
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| T |
31941925 |
agagcatgagaggagaattatcccactgtgaactgcactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttgctc |
31941826 |
T |
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| Q |
393 |
aaagtattcttcccaaccgctctgtctctgctcctcctc |
431 |
Q |
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| T |
31941825 |
aaagtattccttccaaccgctccgtctctgcttctcctc |
31941787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 31956426 - 31956366
Alignment:
| Q |
30 |
ttggtggtgtcaacatagcttggttgatcaattcatttctttgattgcatgt-ttggttca |
89 |
Q |
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| T |
31956426 |
ttggtggtgtcaacatagctgggttgatcaattcatttctttgattgcatgtcttggttca |
31956366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 31968035 - 31967963
Alignment:
| Q |
293 |
agagcatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtc |
365 |
Q |
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| T |
31968035 |
agagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtc |
31967963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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