View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0059_low_4 (Length: 382)
Name: NF0059_low_4
Description: NF0059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0059_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 26315764 - 26315386
Alignment:
| Q |
1 |
caatcaactctttcccatcatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctannnnnnnncaaatgatat |
100 |
Q |
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| T |
26315764 |
caatcaactctttcccaccatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctattttttttcaaatgatat |
26315665 |
T |
|
| Q |
101 |
atctctttgccccctctaatctattctaatataatataatataat-----ctacattgtgtttatatgacataaatattatctaaccctcnnnnnnnnnn |
195 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
26315664 |
atctttttgccccctctaatctattctaatataatataatataatataatctacattgtgtttatatgacataaatattaactaaccctcttttgttttg |
26315565 |
T |
|
| Q |
196 |
nnnnnnnnnctttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaagaggattcctatacaccc |
295 |
Q |
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| T |
26315564 |
ttgtttttgctttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaagatgattcctatacaccc |
26315465 |
T |
|
| Q |
296 |
tagaattatccatgctatcaaagcagccaatgctttagggtatctataaactccatttatttttgtttttgttcttttc |
374 |
Q |
| |
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| T |
26315464 |
tagaactatccatgctatcaaagcagccaatgctttagggtatctataaactccatttatttttgtttttgttcttttc |
26315386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 206 - 343
Target Start/End: Complemental strand, 43110670 - 43110533
Alignment:
| Q |
206 |
tttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaagaggattcctatacaccctagaattatc |
305 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43110670 |
tttataggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattgtgcaagttttgaagaggattcctatacaccctagaataatc |
43110571 |
T |
|
| Q |
306 |
catgctatcaaagcagccaatgctttagggtatctata |
343 |
Q |
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| | | || ||||||||| || ||||||||||| |||| |
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| T |
43110570 |
ccttccattaaagcagcctatactttagggtatgtata |
43110533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 5249925 - 5249978
Alignment:
| Q |
211 |
aggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattg |
264 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||| || ||||| |||| |
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| T |
5249925 |
aggataggatgatgatggagattcattcaaatggtaaaaccattgaagagattg |
5249978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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