View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0060-INSERTION-1 (Length: 348)
Name: NF0060-INSERTION-1
Description: NF0060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0060-INSERTION-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 348
Target Start/End: Original strand, 23106661 - 23106831
Alignment:
| Q |
180 |
caattgtataaaaataatatacaccatttattactattgatttgacttaagagaagagnnnnnnnn--ttaacaaatgaaaatgtatagaaatacattgt |
277 |
Q |
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| T |
23106661 |
caattgtataaaaatagtatacaccatttattactattgatttgacttaaggaaagagaaaaaaaaaattaacaaatgaaaatgtatagaaatatgttgt |
23106760 |
T |
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| Q |
278 |
ttaacaattaaatggttgttcaaataacatttctctattctctaagtatggtgtcacacactcttaccatc |
348 |
Q |
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| T |
23106761 |
ttaacgattaaatggttgtccaaataacatttctctattctctaagtatggtgctacacactcttaccatc |
23106831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 23106858 - 23106924
Alignment:
| Q |
39 |
cgaaaatgactttctatttatcattttcaatgatgcctgttgatgctgtccactctccttgtttatt |
105 |
Q |
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| T |
23106858 |
cgaaaatgactttctatttatcattttcaatgatgcctgttgatgctgtccactctccttgtttatt |
23106924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 28650093 - 28650145
Alignment:
| Q |
261 |
gtatagaaatacattgtttaacaattaaatggttgttcaaataacatttctct |
313 |
Q |
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| T |
28650093 |
gtatataaatacatagttagacaattaaatggttgttcaaataacatttctct |
28650145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 49365280 - 49365313
Alignment:
| Q |
282 |
caattaaatggttgttcaaataacatttctctat |
315 |
Q |
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| T |
49365280 |
caataaaatggttgttcaaataacatttctctat |
49365313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 13078620 - 13078584
Alignment:
| Q |
198 |
atacaccatttattactattgatttgacttaagagaa |
234 |
Q |
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| T |
13078620 |
atacaccatttataactattgatttgactaaagagaa |
13078584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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