View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0060-INSERTION-3 (Length: 518)
Name: NF0060-INSERTION-3
Description: NF0060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0060-INSERTION-3 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 286 - 518
Target Start/End: Complemental strand, 15044107 - 15043874
Alignment:
| Q |
286 |
aattttgagcaaataataatggaaagttacgttaagctcttaaatttaaagagaaacaaataaaaaacacgataatttaaycaagttatttacctttaat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15044107 |
aattttgagcaaataataatggaaagttacgttaagctcttaaatttaaagagaaacaaataaaaaacacgataatttaatcaagttatttacctttaat |
15044008 |
T |
|
| Q |
386 |
ttttgcatcgcttaaataagcagatgcccatttgarcggcgcgtcatggattatcttaactctcttgaagatt-ttttggaaacagcttctttgttttcc |
484 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
15044007 |
ttttgcatcgcttaaataagcagattcccatttgaacggcgcgtcatggattatcttaactctcttgaagatttttttggaaatagcttctttgttttcc |
15043908 |
T |
|
| Q |
485 |
atttgaggctggggctggggctccccgctgctta |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15043907 |
atttgaggctggggctggggctccccgctgctta |
15043874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 286 - 518
Target Start/End: Complemental strand, 15036660 - 15036427
Alignment:
| Q |
286 |
aattttgagcaaataataatggaaagttacgttaagctcttaaatttaaagagaaacaaataaaaaacacgataatttaaycaagttatttacctttaat |
385 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15036660 |
aattttgagcaaatactaatggaaagttacgttcagctattaaatttaaagagaaacaaataaaaaacacgataatttaatcaagttatttacctttaat |
15036561 |
T |
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| Q |
386 |
ttttgcatcgcttaaataagcagatgcccatttgarcggcgcgtcatggattatcttaactctcttgaagatt-ttttggaaacagcttctttgttttcc |
484 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
15036560 |
ttttgcatcgcttaaataagcagattcccatttgaacggcgcgtcatggattatcttaactctcttgaagatttttttggaaatagcttctttgttttcc |
15036461 |
T |
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| Q |
485 |
atttgaggctggggctggggctccccgctgctta |
518 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15036460 |
atttgaggctggggctggggctccccgctgctta |
15036427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 286 - 518
Target Start/End: Complemental strand, 15041654 - 15041421
Alignment:
| Q |
286 |
aattttgagcaaataataatggaaagttacgttaagctcttaaatttaaagagaaacaaataaaaaacacgataatttaaycaagttatttacctttaat |
385 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15041654 |
aattttgagcaaataataatggaaagttacgttcagctcttaaatttaaagagaaacaaataaaaaacacgataatttaatcaagttatttacctttaat |
15041555 |
T |
|
| Q |
386 |
ttttgcatcgcttaaataagcagatgcccatttgarcggcgcgtcatggattatcttaactctcttgaagatttt-ttggaaacagcttctttgttttcc |
484 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15041554 |
ttttgcatcgcttaaataagcagattcccgtttgaacggcgcgtcatggattatcttaactctcttgaagattttcttggaaatagcttctttgttttcc |
15041455 |
T |
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| Q |
485 |
atttgaggctggggctggggctccccgctgctta |
518 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
15041454 |
atttgaggttggggctggggctccccgctgctta |
15041421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 286 - 518
Target Start/End: Complemental strand, 15039157 - 15038924
Alignment:
| Q |
286 |
aattttgagcaaataataatggaaagttacgttaagctcttaaatttaaagagaaacaaataaaaaacacgataatttaaycaagttatttacctttaat |
385 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15039157 |
aattttgagcaaatactaatggaaagttacgttcagctattaaatttaaagagaaacaaataaaaaacacgataatttaatcaagttatttacctttaat |
15039058 |
T |
|
| Q |
386 |
ttttgcatcgcttaaataagcagatgcccatttgarcggcgcgtcatggattatcttaactctcttgaagatttt-ttggaaacagcttctttgttttcc |
484 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
15039057 |
ttttgcatcgcttaaataagcagattcccatttgaacggcgcgtcatggattatcttaactctcttgaagattttcttgaaaatagcttctttgttttcc |
15038958 |
T |
|
| Q |
485 |
atttgaggctggggctggggctccccgctgctta |
518 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |
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| T |
15038957 |
atttgaggttggggctggggctccccgctgctta |
15038924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 15038479 - 15038198
Alignment:
| Q |
5 |
tttatttcagttagttaagacttagctagttgtaaaattgtaaaaagtagcaatatttgtnnnnnnngaaagatagcaatatgactcaaaagtttcaaac |
104 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15038479 |
tttatttcagttaattaagatttagctagttgtaaaattgtaaaaa-tagcaatatttgtaaaaaaagaaagatagcaatatgactcaaaagtttcaaac |
15038381 |
T |
|
| Q |
105 |
ataaaattagtttagataaatacattaataattctgagagtttcattttaacgggaagcacggagcatatgatttgctacattgacgcaaagtttcaaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
15038380 |
ataaaattagtttagataaatacattaataattctgaaagtttcattttaacgggaagcacggggcatatgatttgctacattgacgcaaagtttcagaa |
15038281 |
T |
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| Q |
205 |
tttagtttcaaacacaatattccatcaaaattgatnnnnnnnnnnnnttctgatctaatactgtacggtacttccattataaatt |
289 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15038280 |
tttagtttcaaacacaatattccatcaaaattgat--aaaaaaaaaattctgatctaatattgtacggtacttccattataaatt |
15038198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 15040976 - 15040695
Alignment:
| Q |
5 |
tttatttcagttagttaagacttagctagttgtaaaattgtaaaaagtagcaatatttgtnnnnnnngaaagatagcaatatgactcaaaagtttcaaac |
104 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15040976 |
tttatttcagttaattaagatttagctagttgtaaaattgtaaaaa-tagcaatatttgtaaaaaaagaaagatagcaatatgactcaaaagtttcaaac |
15040878 |
T |
|
| Q |
105 |
ataaaattagtttagataaatacattaataattctgagagtttcattttaacgggaagcacggagcatatgatttgctacattgacgcaaagtttcaaaa |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
15040877 |
ataaaattagtttagataaatacattaataattctgaaagtttcattttaacgggaagcacggggcatatgatttgctacattgacgcaaagtttcagaa |
15040778 |
T |
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| Q |
205 |
tttagtttcaaacacaatattccatcaaaattgatnnnnnnnnnnnnttctgatctaatactgtacggtacttccattataaatt |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15040777 |
tttagtttcaaacacaatattccatcaaaattgat--aaaaaaaaaattctgatctaatattgtacggtacttccattataaatt |
15040695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15043433 - 15043206
Alignment:
| Q |
1 |
atactttatttcagttagttaagacttagctagttgtaaaattgtaaaaagtagcaatatttgtnnnnnnngaaagatagcaatatgactcaaaagtttc |
100 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15043433 |
atactttatttcagttaattaagatttagctagttgtaaaattgtaaaaa-tagcaatatttgtaaaaaaagaaagatagcaatatgactcaaaagtttc |
15043335 |
T |
|
| Q |
101 |
aaacataaaattagtttagataaatacattaataattctgagagtttcattttaacgggaagcacggagcatatgatttgctacattgacgcaaagtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15043334 |
aaacataaaattagtttagataaatacattaataattctgaaagtttcattttaacgggaagcacggggcatatgatttgctacattgacgcaaagtttc |
15043235 |
T |
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| Q |
201 |
aaaatttagtttcaaacacaatattccat |
229 |
Q |
| |
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| |||||||||||| |||||||||||||| |
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| T |
15043234 |
agaatttagtttcacacacaatattccat |
15043206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 15035986 - 15035854
Alignment:
| Q |
1 |
atactttatttcagttagttaagacttagctagttgtaaaattgtaaaaagtagcaatatttgtnnnnnnngaaagatagcaatatgactcaaaagtttc |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15035986 |
atactttatttcagttaattaagatttagctagttgtaaaattgtaaaaa-tagcaatatttgtaaaaaaagaaagatagcaatatgactcaaaagtttc |
15035888 |
T |
|
| Q |
101 |
aaacataaaattagtttagataaatacattaata |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15035887 |
aaacataaaattagtttagataaatacattaata |
15035854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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