View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0060-INSERTION-4 (Length: 653)
Name: NF0060-INSERTION-4
Description: NF0060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0060-INSERTION-4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 235 - 653
Target Start/End: Complemental strand, 15037068 - 15036652
Alignment:
| Q |
235 |
tggggtcaaccagttggtatgaattgctaaaatataaagggattaattcaaattattagtggcgattaggcttctcaaaacccctctacctatttgttgg |
334 |
Q |
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| T |
15037068 |
tggggtcaaccagttggtatgaattgctaaaatataaagggattaattcaaattattagtggcgattaggcttctcaaaacccctctacctatttgttgg |
15036969 |
T |
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| Q |
335 |
gattaaggcaagctaggcgttcaaccggtgcgatgcaggggtcttatcgactataatatagcccaataatcattaaattgatttagtcaataatagataa |
434 |
Q |
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| T |
15036968 |
gattaaggcaagttagacgttcaaccggtgcgatgtaggggtcttatcgactataatatagcccaataatcattaaattgatttagtcaataatagataa |
15036869 |
T |
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| Q |
435 |
tgaattagaggtaatagttctagttcatgttttcaatagagaatgagaaattgaagctcatctacacatgtcacctcatagcaatacttgcataagaata |
534 |
Q |
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| T |
15036868 |
tgaattagaggtaatagttctagttcatg-tttcaatagagaatgagaaattgaagctcatctagacatgtcatctcatagcaatacttgcataagaata |
15036770 |
T |
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| Q |
535 |
actcaagcttaagtttgaaatatagcaaagataggtagataatatagatagattacaac-accacataagattactaacaactttccaaaaattaattgt |
633 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |
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| T |
15036769 |
actcaagctt-agtttgaaatatagcaaagatagatagataatatagatagattacaacaaccacataagattactaacaac-ttccaaaaattaattat |
15036672 |
T |
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| Q |
634 |
gtgtgattaataaccaccaa |
653 |
Q |
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| T |
15036671 |
gtgtgattaataactaccaa |
15036652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15037330 - 15037089
Alignment:
| Q |
1 |
aaaattagagtacaaagacattacatgacaaaatggaatag---ttaagatggtcatccaagaccaccacatatcatttggatcatctaattaatatatt |
97 |
Q |
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| T |
15037330 |
aaaattagagtacaaagacattacatgacaaaatggaatagcagttaagatggtcatccaagaccaccacatatcatttggatcatctaattaatatatt |
15037231 |
T |
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| Q |
98 |
aagataaaaagaaaaagattacaacttagaagtgcagtgaactgattctaaatagttaagaagtaagtaaaattgtctccatatgaattttggtttcgac |
197 |
Q |
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| T |
15037230 |
aagataaaaagaaaaagattacaacttagaagtgcagtgaactgattctaaatagttaaaaagtaagtaaaattgtctccatatgaattttcgtttcgac |
15037131 |
T |
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| Q |
198 |
aaggcaattagttaaacctattaaatcagtcacattgtgggg |
239 |
Q |
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| T |
15037130 |
aaggcaattagttaaacctattaaatcagtcacattgtgggg |
15037089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 14986180 - 14986061
Alignment:
| Q |
237 |
gggtcaaccagttggtatgaattgctaaaatataaagggattaattcaaattattagtggcgattaggcttctcaaaacccctctacctatttgttggga |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
14986180 |
gggtcaaccagttggtatgaattgctaaaatataaaggggttaattcagattattagtggcgattaggcttctcgagtcccctctacctatttgttggga |
14986081 |
T |
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| Q |
337 |
ttaaggcaagctaggcgttc |
356 |
Q |
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| T |
14986080 |
ttaaggcaagctagacgttc |
14986061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 14986305 - 14986214
Alignment:
| Q |
142 |
attctaaatagttaagaagtaagtaaaattgtctccatatgaattttggtttcgacaaggcaattagttaaacctattaaatcagtcacatt |
233 |
Q |
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| T |
14986305 |
attctaagtaattaaaaagtaagtaagatcattttcatatggattttcgtttcgataaggcaattagttaaacctattaaatcagtcacatt |
14986214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 19741244 - 19741334
Alignment:
| Q |
363 |
tgcgatgcaggggtcttatcgactataatatagcccaataatcattaaattgatttagtcaataatagataatgaattagaggtaatagtt |
453 |
Q |
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| T |
19741244 |
tgcgacgcacgggtcctatcgactataataaagtctaataatcttaaaattgatatagtgaagaataagtaatgaattagaggtaatagtt |
19741334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 617
Target Start/End: Original strand, 19741451 - 19741538
Alignment:
| Q |
534 |
aactcaagcttaagtttgaaatatagcaaagataggtaga----taatatagatagattacaac-accacataagattactaacaactt |
617 |
Q |
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| T |
19741451 |
aactcaagcttaa-tttgcaatatagcaaagatagatagatagataatatagataggttacaacaaccacatcacatgactaacaactt |
19741538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 495
Target Start/End: Original strand, 53690721 - 53690749
Alignment:
| Q |
467 |
tcaatagagaatgagaaattgaagctcat |
495 |
Q |
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| T |
53690721 |
tcaatagagaatgagaaattgaagctcat |
53690749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 534
Target Start/End: Complemental strand, 5431826 - 5431757
Alignment:
| Q |
465 |
tttcaatagagaatgagaaattgaagctcatctacacatgtcacctcatagcaatacttgcataagaata |
534 |
Q |
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||||||||| ||||||| ||||||||||||| || |||||||| |||| ||| |||||||||||||| |
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| T |
5431826 |
tttcaatagcgaatgaggaattgaagctcatttagacatgtcaaatcatcacaactcttgcataagaata |
5431757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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