View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0060-INSERTION-8 (Length: 298)
Name: NF0060-INSERTION-8
Description: NF0060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0060-INSERTION-8 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 4623376 - 4623189
Alignment:
| Q |
8 |
aataccactcaaaggtaacaattagtgatcattttatgaggaggcaaaaagttacgtataatatgatagtaaacatttacttatattttcaaaatgctaa |
107 |
Q |
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| T |
4623376 |
aataccactcaaaggtaacaattagtgatcattttatgaggaggcaaaaagttacgtataatatgatagtaaacatttacttatattttcaaaatgctaa |
4623277 |
T |
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| Q |
108 |
ttaatgttcatttgaagttttctaacaaagtatcaaattgtttaaaattttatgaaaacttgttgagttgatatacttaataagaatt |
195 |
Q |
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| T |
4623276 |
ttaatgttcatttgaagttatctaacaaagtatcaaattgtttaaaattttatgaaaacttgttgagttgatatactcaataagaatt |
4623189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 4623454 - 4623372
Alignment:
| Q |
215 |
aattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatac |
297 |
Q |
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| T |
4623454 |
aattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatac |
4623372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 4259157 - 4259239
Alignment:
| Q |
215 |
aattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatac |
297 |
Q |
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| T |
4259157 |
aattgttttcttctctccagctagtgcaagtaccttcttgtctgttttacactttcgtacactgtttgaaaaaggtctaatac |
4259239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 4259235 - 4259308
Alignment:
| Q |
8 |
aataccactcaaaggtaacaattagtgatcatttt-atgaggaggcaaaaagttacgtataatatgatagtaaa |
80 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| |||||||||||| |
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| T |
4259235 |
aataccactcaaaggtaacaatttctgatcatttttatgaggagacaaaaagttacttatattatgatagtaaa |
4259308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 4627277 - 4627215
Alignment:
| Q |
235 |
ctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatac |
297 |
Q |
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|||||||| || | ||||||||| |||| ||||||| |||||||||||| ||||||||||||| |
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| T |
4627277 |
ctagtgcatgttctttcttgtctattttgcactttcgtacactgtttgaaaaaggtctaatac |
4627215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 4255620 - 4255702
Alignment:
| Q |
215 |
aattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatac |
297 |
Q |
| |
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||||||| || | ||||||| || |||| ||| ||||| |||| ||||||||| | |||||||||| ||||||||||||||| |
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| T |
4255620 |
aattgttctcctttccccagatattgcatgtatgttcttctctgctttacacttccgtacactgtttaagaaaggtctaatac |
4255702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4255698 - 4255766
Alignment:
| Q |
8 |
aataccactcaaaggtaacaattagtgatcatttt-atgaggaggcaaaaagttacgtataatatgata |
75 |
Q |
| |
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||||||| |||| ||||| |||| ||||| ||||| |||||||| ||||||||||| |||||| ||||| |
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| T |
4255698 |
aataccattcaatggtaaaaatttgtgataatttttatgaggagacaaaaagttacttataatttgata |
4255766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 39782774 - 39782730
Alignment:
| Q |
149 |
ttaaaattttatgaaaacttgttgagttgatatacttaataagaa |
193 |
Q |
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| T |
39782774 |
ttaaaattttataaaaacttgtgaagttgatatacttaataagaa |
39782730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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